This article examines the evidence of a genetic basis for cutaneous forms of lupus erythematosus (LE), namely, subacute cutaneous LE (SCLE) and discoid LE (DLE).
The current theory is that multiple genes, including particular allelic polymor- phisms, may confer susceptibility to these LE-specific skin diseases (Sontheimer 1996) and that perhaps some of these alleles may be shared with polymorphous light eruption (PLE), a common condition that is clinically related to lupus (Nyberg et al.
1997).
Sequeira (Sequeira 1903) described two pairs of sisters (not twins) affected by cutaneous LE (CLE), raising the possibility that it might be a familial condition. Since then, several studies have reported the occurrence of CLE, particularly DLE, in monozygotic twins (Steagall et al. 1962, Wojnarowska 1983) and first-degree relatives of lupus probands (Beckett and Lewis 1959, Leonhardt 1957). Gallo and Forde (Gallo and Forde 1966) suggested that inheritance of a “dominant gene,” with or without common environmental factors, may explain the observation of DLE across three generations of one family. A mathematical analysis of the age and sex distribution of DLE incidence in the population was also used in the 1960s by Rowell to support a genetic basis for DLE (Burch and Rowell 1968).
More recently, Lawrence et al. (Lawrence et al. 1987) investigated first-degree rela- tives of 37 patients with DLE in a case-control study. They found a significantly increased prevalence of DLE (3.5%) in 255 first-degree relatives of DLE probands compared with 0.5% in 664 controls. Heritability analysis suggested a polygenic inheritance, with 44% heritability. Several recent genome-wide marker scans for sys- temic LE (SLE) have subsequently been performed in families with multiple affected individuals to identify regions of the genome that may be linked to the disease phe- notype (Gaffney et al. 1998, 2000, Gray-McGuire et al. 2000, Lindqvist et al. 2000, Moser et al. 1998, Nath et al. 2001, Shai et al. 1999). These scans confirm that suscep- tibility to lupus is likely to be determined by multiple genetic regions, with different susceptibility loci in different ethnic groups.
It has long been known that certain conditions predispose to CLE. For example, DLE has been described in patients and carriers of X-linked and autosomal-recessive chronic granulomatous disease (Arnett 1997, Yeaman et al. 1992) and is also associ- ated with non-X-linked hyper-immunoglobulin M syndrome (Wolpert et al. 1998).
We and others have found a higher prevalence of PLE in patients with both SCLE and DLE than in controls (Millard et al. 2001a, Nyberg et al. 1997), suggesting that they may share a common genetic background. The study of these conditions may help shed light on the genetic basis of LE in the future.
Molecular Genetics
of Cutaneous Lupus Erythematosus
Thomas P. Millard
15
Techniques to Examine Susceptibility Genes in Cutaneous Lupus Erythematosus
There are several major approaches to the study of genetic susceptibility in any given complex (multifactorial) disease, including twin pair analysis, association analysis, family linkage studies (including “genome scans”), and transmission disequilibrium testing. Twin pair analysis is probably the best approach to investigate the relative importance of genetic and environmental factors in disease susceptibility; however, the prevalence of CLE is too low for a formal concordance study even in a large popu- lation-based twin sample. Association studies (case-control) examine the relationship between the disease and a given candidate gene in the population. They assume that the candidate gene is involved in the pathogenesis of the disease and that a specified allelic variant (polymorphism) of this gene will be overrepresented in patients com- pared with unaffected controls. For example, this approach has been used to support a role for corneodesmosin in psoriasis (Enerback et al. 2000). This technique requires careful phenotype selection and is vulnerable to the problem of matching the ethnic background of cases and controls (“population stratification”). Another potential problem is that the association between a candidate gene polymorphism and disease may exist only because the polymorphism is a marker for the real disease-causing allele, either at the same gene locus or at a nearby gene, with the marker and the disease alleles being in “linkage disequilibrium” (Ralston 1998).
Family linkage analysis has the advantage that it does not require a candidate locus and also avoids the problem of population stratification. However, it requires a large set of several hundred molecular markers to type polymorphisms throughout the entire genome to identify regions that are linked within the family to the disease.
These genome-wide scans, used in human SLE, have identified high “logarithm of odds” (lod) scores for several regions, including Fc γRIIA at band 1q23, the major his- tocompatibility complex (MHC) at 6p21.3, and 1q31, which includes the genes encod- ing interleukin (IL) 10 and Ro60 (Moser et al. 1998, Gaffney et al. 1998, Shai et al.
1999). No genome-wide searches have so far been performed in CLE, although DLE families with multiple affected individuals are probably sufficiently common for such an analysis in the future.
Transmission disequilibrium testing (TDT) assumes that a heterozygous parent should transmit the disease-associated allele to an affected child more often than the 50% expected from standard Mendelian inheritance (Lewis 2000). TDT therefore tests family linkage in the presence of association, avoiding the problem of popula- tion stratification, and may be used to narrow candidate regions identified through genome-wide searches. We are currently using TDT to investigate susceptibility genes for SCLE and DLE.
Candidate Genes in Cutaneous Lupus Erythematosus
Selection of candidate genes for analysis in complex multifactorial traits such as CLE
draws on multiple sources of information. In the case of LE, these include family link-
age studies in human and animal models of lupus, immunohistochemical analysis of
skin samples, and studies of alleles identified as possible candidates in other (related)
autoimmune diseases. For example, at least 10 loci have been found to predispose to LE in New Zealand lupus-prone mice (Kono et al. 1994), in addition to the previously mentioned loci that are linked to human lupus. In the murine model, genetic suscep- tibility seems to confer different levels of pathogenesis, including separate loci for autoantibody production, specific organ destruction, and mortality. Only one locus, the MHC (H-2 in mice), is linked to all three levels of disease.
Immunohistochemical analysis may be used to localize the expression of specific proteins within the skin of patients with lupus, perhaps implying abnormal regula- tion of the underlying genes that encode these proteins. For example, increased kera- tinocyte expression of intercellular adhesion molecule-1 (ICAM-1) has been demon- strated in evolving ultraviolet (UV)-induced lesions of CLE and PLE, but not in healthy controls (Nyberg et al. 1999). Thus, ICAM-1, its ligand, and upstream regula- tors may be deemed possible candidates to study (Norris et al. 1992).
Association in other autoimmune disorders is reported for various loci encoding cytokines, cytokine receptors, antioxidant enzymes, and adhesion molecules in rheumatoid arthritis, dermatomyositis, and SLE. It is therefore possible that the poly- morphisms at these loci may be candidates for the related autoimmune CLE.
Finally, a candidate gene may be inferred from knowing the therapeutic action of drugs used to treat the disease. For example, thalidomide, which inhibits tumor necrosis factor (TNF)- α, is particularly effective for treating SCLE and DLE (Wallace 1997). This suggests that TNF (or possibly one of its common polymorphisms) may contribute to the pathogenesis of CLE.
The Major Histocompatibility Complex
From such studies, a variety of candidate gene loci have emerged that may prove important in the pathogenesis of CLE. The most important of these loci to date are found within the MHC. The human MHC (Fig. 15.1) is a diverse genetic region that plays a crucial role in control of the immune response and that has recently been sequenced by the MHC Sequencing Consortium (1999). The human MHC genes, clus- tered together in a segment of chromosome 6 (6p21.3), are organized into three regions (I, II, and III) and encode three major classes of proteins: class I human leukocyte antigens (HLAs) (including the classical antigens A, B, and Cw), HLA class II antigens (DP, DQ, and DR), and class III molecules, including complement compo- nents, TNF ( α and β), and heat shock proteins.
HLA Genes and Cutaneous Lupus Erythematosus
In several serologic studies of the class I and class II HLA regions in patients with
SCLE (mainly Caucasian), the HLA A1, B8, DR3, DQ2, DRw52, C4null ancestral hap-
lotype has been consistently identified as a susceptibility haplotype for SCLE, partic-
ularly in patients seropositive for anti-Ro/SSA (Bielsa et al. 1991, Herrero et al. 1988,
Johansson-Stephansson et al. 1989, Provost et al. 1988, Sontheimer et al. 1981, 1982,
Vazquez-Doval et al. 1992, Watson et al. 1991), confirmed by our recent analysis of
HLA genes in 36 patients with SCLE (Millard et al. 2001b). This ancestral haplotype
is associated with susceptibility to a variety of other autoimmune diseases, including
insulin-dependent diabetes mellitus, dermatitis herpetiformis, and myasthenia gravis
(Price et al. 1999).
Watson et al. (Provost and Watson 1993, Watson et al. 1991) found that this associ- ation was only present in SCLE, SLE, and Sjögren’s syndrome in the presence of anti- Ro/SSA, suggesting that the immunogenetic association is primarily with the produc- tion of antibody. There is substantial evidence to support the pathogenic role of the anti-Ro/SSA antibody in SCLE (Ben-Chetrit 1993), where circulating anti-Ro/SSA binds keratinocytes expressing surface Ro/SSA antigen, leading to the destruction of basal keratinocytes (Norris 1993) (Fig. 15.2). In addition to controlling the presence or absence of the anti-Ro/SSA response, the MHC may also determine the level of the response; Harley et al. (Harley et al. 1986) found that possession of both HLA DQ1 and DQ2 led to the highest titers of anti-Ro/SSA. This MHC specificity suggests that class II HLA antigens may determine whether the individual can present fragments of Ro/SSA antigen to their lymphocytes.
The Ro/SSA 60-kDa protein (Ro60 or SSA2) is the major component of the Ro ribonucleoprotein (RNP) complex [in stable association with a human cytoplasmic RNA (hY RNA) and the La/SSB protein, Fig. 15.3], to which an immune response is a specific feature of several autoimmune diseases, including SCLE and SLE. We recently characterized the Ro60 gene structure (Fig. 15.4) and examined whether any observed sequence alterations were associated with serum anti-Ro/SSA antibody in SCLE and could therefore be of pathogenic significance (Millard et al. 2002). Het- eroduplex analysis of polymerase chain reaction (PCR) products from patients and controls spanning all Ro60 exons (1 to 8) revealed a common bandshift in the PCR products spanning exon 7. Sequencing of the corresponding PCR products demon-
Fig. 15.1.
Abbreviated gene map of the human MHC at 6p21.3 illustrating the major loci to which the text refers. The illustrated class II loci are, themselves, composed of multi- ple genes that contribute to the class II antigen structure.
HSP, heat shock protein;
TNF, tumor necrosis factor
strated an A>G substitution at nucleotide position 1318-7, within the consensus acceptor splice site of exon 7 (GenBank XM001901). The allele frequencies were major allele A (0.71) and minor allele G (0.29) in 72 control chromosomes, with no significant differences among patients with SCLE (anti-Ro/SSA positive), patients with DLE (anti-Ro/SSA negative), and healthy controls, suggesting no relationship between this nucleotide substitution and generation of anti-Ro/SSA.
Fig. 15.3.
Organization of the Ro/SSA RNP complex (Gordon et al. 1994). hY RNA, human cytoplasmic RNA
Fig. 15.2.
Probable pathogenic mechanism of photosensitive skin lesions in LE. Ultraviolet radi-
ation (UVR) stimulates the cell surface expression of nuclear antigens, including Ro/SSA, on the
surface of keratinocytes and induces E-selectin and intercellular adhesion molecule-1 (ICAM-
1) expression on dermal endothelial cells, which leads to the margination and local migration of
lymphocytes. Norris (Norris 1993) proposed this model of photosensitive LE, whereby circulat-
ing anti-Ro/SSA antibody binds keratinocytes that express this surface Ro/SSA antigen, leading
to antibody-dependent cellular cytotoxicity by the infiltrating cytotoxic lymphocytes and the
subsequent destruction of basal keratinocytes. Casciola-Rosen and Rosen (Casciola-Rosen and
Rosen 1997) have added to this model by describing the expression of Ro/SSA antigen in “sur-
face blebs” of UVB-irradiated apoptotic keratinocytes, which may contribute to induction of
autoimmunity to Ro/SSA. IL-1, interleukin-1; TNF, tumor necrosis factor
A relatively small number of studies have examined HLA associations in Cau- casian patients with DLE. The major associations include the A1, B8, DR3 and also the B7, DR2 haplotypes (Fowler et al. 1985, Knop et al. 1990, Millard et al. 1977), although other studies have found no HLA associations with DLE (Bielsa et al. 1991, Tongio et al. 1982). Our own data indicate a significant association with the previously men- tioned haplotypes and DLE (Millard et al. 2001b). Finally, the photosensitive “butter- fly rash” of lupus (acute CLE) rarely occurs outside the context of active SLE, so little effort has been made to determine any specific HLA associations (Sontheimer and Provost 1997).
Complement Genes
The MHC also includes genes for various complement components (C2, C4A, C4B, and factor B) in the class III region (Meo et al. 1977), between class I and class II, which have been implicated in the pathogenesis of CLE. Inherited deficiencies of components C2 and C4 are associated with DLE (Braathen et al. 1986, Provost et al.
1983), SCLE (Callen et al. 1987, Levy et al. 1979, Provost et al. 1983), and the presence of anti-Ro/SSA (Meyer et al. 1985, Provost et al. 1983). In addition, lupus profundus has been reported in patients with partial deficiency of both C4 allotypes (Burrows et al. 1991, Nousari et al. 1999). The proposed basis for these associations includes either a failure to clear immune complexes and apoptotic cells or linkage disequi- librium with the real disease-predisposing locus (Levy et al. 1979, Sullivan 1998).
TNF Genes
TNF is encoded by a class III gene of the MHC (Carroll et al. 1987, MHC Sequencing Consortium 1999). TNF has been implicated in the pathogenesis of CLE following UVR (Kock 1990, Norris 1993) (Fig. 15.2) since it stimulates expression of the Ro anti- gen on the keratinocyte surface. The rare –308A polymorphic form of TNF (TNF2)
Fig. 15.4.
Structural organization of the Ro60 gene. The coding region of the gene contains 8
exons spanning more than 16 kB of genomic DNA and ranging in size from 114 to greater than
580 bp. Exons are depicted by the vertical black shaded areas, and the start of the 5' and 3'
untranslated regions are in white. The exons are numbered above; introns are represented by
horizontal lines
(Abraham et al. 1999) is associated with increased UVB-induced TNF production in keratinocytes (Silverberg et al. 1999) and has demonstrated a strong association with SCLE (Werth and Sullivan 1999). TNF –308A does, however, lie on the A1, B8, DR3 extended haplotype in Caucasians (Wilson et al. 1993) and may therefore demon- strate association only because of linkage disequilibrium. However, a recent analysis in patients with SLE suggests that both TNF –308A and HLA-DR3 contribute inde- pendently to lupus susceptibility (Rood et al. 2000).
Heat Shock Protein Genes
The three heat shock protein 70 (Hsp70) genes are located within the class III MHC region, and linkage disequilibrium with other HLA genes has led several authors to investigate the role of Hsp70 genes in susceptibility to autoimmune and allergic dis- ease (Aron et al. 1999). The activation of Hsp gene expression (the “stress response”) is a cellular mechanism that protects cells against stresses such as heat, UVR, cytokines, and chemicals (Muramatsu et al. 1992, Stephanou et al. 1997). Ghoreishi et al. (Ghoreishi et al. 1993) used immunohistologic analysis to demonstrate diffusely increased Hsp70 expression in the lesional skin of patients with SLE vs controls and DLE samples. Furukawa et al. (Furukawa et al. 1993) observed increased binding of anti-Ro/SSA antibodies to keratinocytes after incubation with a prostaglandin stres- sor that is known to induce Hsp formation, suggesting that heat shock proteins may be involved in the expression of Ro antigen at the cell surface. Various polymor- phisms exist for the Hsp70 genes (Bolla et al. 1998, Esaki et al. 1999), although none have yet been examined for association in CLE.
Candidate Loci Outside the MHC
Several genetic regions outside the MHC seem to confer susceptibility to cutaneous forms of LE or demonstrate association or linkage with the anti-Ro/SSA response, including loci encoding cytokines, cytokine receptors, molecules involved in antigen recognition, and antioxidant enzymes, all of which are plausible candidates and are summarized in Table 15.1.
IL-1 Gene Cluster
The primary cytokine IL-1 is a major proinflammatory cytokine, encoded by a gene cluster at band 2q13, comprising IL-1 α and IL-1β (synthesized by keratinocytes and Langerhans’ cells, respectively) and the IL-1 receptor antagonist gene (IL-1RN), which has been associated with photosensitivity in LE and with DLE by two separate teams in case-control studies (Blakemore et al. 1994, Suzuki et al. 1997). In our association analysis, we found that IL1B +3954 T was significantly less frequent in patients with SCLE (28%) compared with controls (47%; P=0.039), although this was lost on cor- rection for multiple testing (Millard et al. 2001c).
IL-10
Linkage in human lupus has been shown for band 1q31 (Moser et al. 1998), within
which lies the gene encoding IL-10 (Eskdale et al. 1997, Kim et al. 1992). IL-10 is
expressed by UVB-stimulated keratinocytes and is chemotactic for CD8
+T cells.It pro-
motes an inflammatory response through its effects on B cells in lupus, whose produc-
tion of immunoglobulin is largely IL-10 dependent (Llorente et al.1995).It also up-reg- ulates the expression of ICAM-1 and E-selectin on human dermal endothelial cells (Palmetshofer et al. 1994). Three functional single nucleotide polymorphisms (SNPs) of the IL-10 gene promoter were reported by Turner et al. (Turner et al. 1997), includ- ing –1082 G/A, –819 C/T, and –592 C/A, who showed that they influenced in vitro pro- duction of IL-10 by mononuclear cells.Comparing the overall haplotype combinations at these three loci, significant distortion was demonstrated between anti-Ro/SSA-pos- itive and anti-Ro/SSA-negative SLE cases (P=0.005), with overrepresentation of the GCC and ACC haplotypes in the former group (Lazarus et al. 1997). This suggests that
Table 15.1.
Genes outside the MHC
athat seem to confer susceptibility to cutaneous forms of lupus erythematosus (LE) or demonstrate association or linkage with the anti-Ro/SSA response
Gene Locus Evidence
1. Cytokine genes
Interleukin-1 gene 2q13 Association of an IL-1 RA
cluster (IL-1A, B, and RA) allele with DLE and with
photosensitivity in SLE.
Interleukin-10 (IL-10) 1q31 Linkage of 1q31 to human LE.
Association of three IL-10 SNPs with anti-Ro produc- tion in SLE.
2. Adhesion molecule/
receptor genes
Intercellular adhesion 19p13.3-p13.2 Increased keratinocyte
molecule-1 (ICAM1) expression of ICAM-1 in
CLE.
E-selectin (SELE) 1q23–25 Up-regulated endothelial
expression in the skin of patients with cutaneous LE vs controls.
Fc gamma receptor II 1q23 Linkage of 1q23 to human
(FCGR2A) systemic LE. Necessary for
ADCC (Fig. 15.4).
T-cell receptor (TCR) 7q35 Association of two RFLPs, for
C β1 and Cβ2 TCRs Cb1 and Cb2, with anti-
Ro/SSA production in SLE.
3. Antioxidant enzyme genes
Glutathione S-trans- 1p13 Association of GSTM1 null
ferase M1 (GSTM1) status and anti-Ro/SSA pro-
duction in SLE.
4. Apoptosis genes
Fas (TNFRSF6) 10q24.1 Association of an SNP with
photosensitivity in SLE
a