European sea bass (Dicentrarchus labrax) hypoxia-inducible factor mRNA, complete cds. NCBI (http://www.ncbi.nlm.nih.gov/nuccore), GeneBank accession number: DQ171936

1

Dicentrarchus labrax hypoxia-inducible factor mRNA, complete cds

GenBank: DQ171936.2 FASTA Graphics

Go to:

LOCUS DQ171936 3317 bp mRNA linear VRT 12-JUN-2008 DEFINITION Dicentrarchus labrax hypoxia-inducible factor mRNA, complete cds.

ACCESSION DQ171936

VERSION DQ171936.2 GI:125654603 KEYWORDS .

SOURCE Dicentrarchus labrax (European seabass) ORGANISM Dicentrarchus labrax

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;

Actinopterygii; Neopterygii; Teleostei; Euteleostei; Neoteleostei;

Acanthomorpha; Acanthopterygii; Percomorpha; Perciformes;

Percoidei; Moronidae; Dicentrarchus.

REFERENCE 1 (bases 1 to 3317)

AUTHORS Terova,G., Rimoldi,S., Cora,S., Bernardini,G., Gornati,R. and Saroglia,M.

TITLE Acute and chronic hypoxia affects HIF-1a mRNA levels in sea bass (Dicentrarchus labrax)

JOURNAL Aquaculture 279 (1-4), 150-159 (2008) REFERENCE 2 (bases 1 to 3317)

AUTHORS Terova,G., Rimoldi,S., Bernardini,G., Gornati,R. and Saroglia,M.

TITLE Effects of short and long term hypoxia on hypoxia-inducible factor 1a (HIF-1a) gene expression levels in sea bass

JOURNAL Unpublished

REFERENCE 3 (bases 1 to 3317)

AUTHORS Terova,G., Bernardini,G., Gornati,R., Rimoldi,S. and Saroglia,M.

TITLE Direct Submission

JOURNAL Submitted (17-AUG-2005) Department of Biotechnology and Molecular Sciences, University of Insubria, Via J.H. Dunant, 3, Varese 21100, Italy

REFERENCE 4 (bases 1 to 3317)

AUTHORS Terova,G., Rimoldi,S., Bernardini,G., Gornati,R. and Saroglia,M.

TITLE Direct Submission

JOURNAL Submitted (12-FEB-2007) Department of Biotechnology and Molecular Sciences, University of Insubria, Via J.H. Dunant, 3, Varese 21100, Italy

REMARK Sequence update by submitter

COMMENT On Feb 12, 2007 this sequence version replaced gi:74054126.

FEATURES Location/Qualifiers

source 1..3317

/organism="Dicentrarchus labrax"

/mol_type="mRNA"

/db_xref="taxon:13489"

CDS 1..2265

/note="HIF-1a"

/codon_start=1

/product="hypoxia-inducible factor"

/protein_id="AAZ95453.2"

/db_xref="GI:125654604"

/translation="MDTGVVPETESRVSSERRKEKSRDAARCRRGKESEVFYELAQEL PLPHSVSSSLDKASIMRLTISYLRMRKLLNTDEPMKDEETDLDLQLNSSYLKALEGFL MVLSEDGDMIYLSENINKCLGLAQFDLTGHSVFDFIHPCDQDELREMLVHRTGSKKSK EPNTGRSFFLRMKCTLTSRGRTVNVKSATWKVLHCSGHVHVYDSHTEESTNGQKEPPI PYLVLICDPVPHPSNIEVPLDSKTFLSRHTMDMKFTYCDERITELMGYDPEDLLNRSV

2

YEYYHAQDSDHLTKTHQNLFAKGQVCTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQ CVVCVNFVLSGIQEEKLILSLEQIEDVKPVKAELQQGEEKAVVESSEPDIPRSPTPLK EEVEEKVPEVDVIKLFTQAVAAQSLVSLYDRLKEEPEALTLLAPAPGDTIISLDFSCP DSEIPMMNDVPVYNDVMLPSTSDKLALPLSPLPPSEPLHVTTASEDAKAQRYKPAPST TPASSSEPGSPLDFCFPMESDMSSDFKLDLVEKLFAIDTEPKTPFTTQAPEDFDLETL APYIPMDDDFQLRSVTPDEPLSCEPVKSRQSSPVCVTQDVHCYKSPGSRTASPAPPEP VNASHLATILAKRTTQLDKEVSLSTLAAQNTPRKRKLCDIKEMIGLGSLRPEQLEQGK KLKASESGTTTTILLLPSDLASRLLGSSSEGTSSLFTLPQLTRDDCEVNAPLQGRQYL LQGEELLRALDHVN"

ORIGIN

1 atggacacag gagttgtccc agaaacagaa agcagggtga gctcggagcg gaggaaggag 61 aagtcgaggg atgcggcgcg atgccggcgc gggaaggagt cagaggtgtt ttacgagctg 121 gcccaggagc tgccactgcc ccacagtgtc agctccagcc tggacaaggc ctcaataatg 181 agactcacca tcagctacct gcgcatgagg aaactgctca acactgatga gccaatgaaa 241 gacgaggaaa cagacctgga tctccagtta aacagctcct acctaaaggc tctggagggt 301 tttctcatgg tgctgtctga agacggagat atgatctatc tctcggagaa tatcaacaag 361 tgccttgggc tggcacagtt tgacctgact ggacacagtg tgtttgactt catacatccc 421 tgtgaccaag atgagctgag ggagatgctg gtccacagaa caggctctaa aaagtccaag 481 gaaccaaaca cagggcgcag ctttttcctc cgaatgaagt gcactctcac aagcaggggc 541 cgcaccgtca atgtcaaatc agctacatgg aaggtgctcc actgctcagg acatgtccat 601 gtatatgaca gccacactga ggagagtacc aacgggcaaa aagagccacc tatcccctat 661 ttggttttga tctgtgaccc cgtcccacac ccctccaaca ttgaggtccc actggatagc 721 aagacctttc tcagccgcca cacaatggac atgaagttca catattgtga cgagaggatc 781 actgaactca tgggttatga tccagaggac ctgttgaatc gttctgtgta cgagtattat 841 cacgctcagg actcagacca tctcaccaag actcaccaaa acttgtttgc aaagggccaa 901 gtctgcacag gccagtaccg gatgttggcc aagagaggag gctttgtgtg ggtggagacc 961 caagccactg tcatctacaa caacaagaac tcccaaccac agtgtgtcgt ctgtgtcaac 1021 tttgtgctca gtggcatcca ggaggagaaa ctgatcctgt ctctggagca gattgaggat 1081 gtgaagccag tgaaggcgga gctgcagcag ggggaagaaa aggctgtagt tgagagcagc 1141 gagcctgata tccccagatc cccaacccct ctgaaggagg aggtggagga gaaggtccca 1201 gaggtggatg tgatcaaact gttcactcag gcagtagcgg cccagtcgct ggttagcctg 1261 tatgacaggc tgaaggagga gcctgaggcc ctcaccctgc tggccccagc tccgggagac 1321 accatcatct ccctggactt cagctgccct gattcagaga tcccgatgat gaacgatgtt 1381 cctgtctaca atgatgtaat gcttccctcc accagtgaca agctggctct gcctctttcc 1441 cctctgccgc ccagtgagcc tctccacgtc accaccgcat ctgaggatgc aaaagctcag 1501 cgctataaac cagccccgtc tactacaccg gccagctcct cagagcctgg cagtccgttg 1561 gacttttgtt tccccatgga gtcagatatg agctcagatt tcaaactcga cttggtggag 1621 aagctgtttg ccattgatac agagcccaag acccccttca ccacacaggc accggaagac 1681 ttcgatctgg agacgttagc tccctacatc cccatggacg atgacttcca gctgcgcagt 1741 gtgaccccag acgagcctct atcttgtgaa ccagtcaaat cccgtcagag ttctccagta 1801 tgcgtcacac aggacgtcca ttgctataaa tcaccaggca gtcgcacagc ttctccggca 1861 ccacctgagc cagtaaacgc ctctcatctt gccaccatcc ttgctaagag gaccacacag 1921 ctggacaaag aagtatcgct cagcaccctg gcagctcaga acacaccgcg taaaagaaaa 1981 ctgtgtgaca taaaagagat gattggattg ggatctctgc gcccggaaca actggagcag 2041 ggcaaaaagc tgaaggcatc agagtcagga acaaccacaa ccatacttct gctgccgtca 2101 gatttggcga gtcgtctgct gggcagctcg tcagagggca cgagttccct cttcaccctg 2161 ccacagctca cccgtgacga ctgcgaggtc aacgccccct tacagggtcg tcagtacctg 2221 ctgcaggggg aggagctgct gcgcgctctg gaccacgtca actgagtcat tgcttagcct 2281 gctcactgct gaactagact ggacactaca atttctccct catattgtca ctccctctca 2341 aagacccccc ccaccctact accccttatt tatgtatctg tttgagtttg actatagttt 2401 tgctgctgtg tgggcacatc atgtgatatc tgcagcattc caccgtgaca aacaccatgg 2461 cagcatttgg gttttggtgc aagggattca gacatcatga gatgtccaat tgttgttttt 2521 tttcgttttg tttcctctct cttcggggag tctctcagca cacagcgcct cgacagatga 2581 cccttttcca gcaggtcacc acagaacctg gcgctactgc cagcagtgta ttgtaagctt 2641 cagtcgcaca atttatattt tcttaaaaag aaaaatatta ccagcaatat atattaagcc 2701 tttttaaagt cgttttaatg ggatttgaac aattttattt ttcctcccat acttgtatgt 2761 tgtagtactc gtacctaaca agatgtcttt agtcgagaag tatgaacata ttgtttaaac 2821 cttaggtggt ttgaatgtta tctccattta atagttatca gtctttgagg taaatgcatt 2881 taattgtgta gcagtccagt acatgtcact ttattacttt actgtaagtg tgtgttactg 2941 tacatatacc agggaaattt gaatttactc agtatggctt cacagttttg actctcaaaa 3001 tgaaatatga gtcttcacta tttttgtttg cttctcatca tggagaattg gcatttttct 3061 cttaacatga agtggattca tgtttttggt ttttaatgtg cgtgacatac tcaaaatgag 3121 tctgttttaa agtaagtagg atctcgacaa ttcatatact tgtgtgatca tagtagcatt 3181 cgtgagttgt caaacttgtt tgcttagtta atggtagtca gttcaatacc attgatccct 3241 gccatattgt tgggtctctc atgcttcttg ttgctgtcta acattaaatg gctttaatga

3 3301 aaaaaaaaaa aaaaaaa

//