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Changes in pathological phenotype of C9orf72 ALS iPSC-derived lines after treatment with Morpholino oligomers

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Changes in pathological phenotype of C9orf72 ALS iPSC-derived lines after treatment with Morpholino oligomers

M. BERSANI

1

, M. TAIANA

1

,, F. BIELLA

1

, M. NIZZARDO

2

, S. GHEZZI

2

, N. BRESOLIN

2

, G.P. COMI

2

, S. CORTI

2

1 Department of Pathophysiology and Transplants, University of Milan  2 IRCCS Ca’ Granda Foundation, Ospedale Maggiore Policlinico Milano

Amyotrophic lateral sclerosis (ALS) is a fatal disorder characterized by progressive degeneration of motor neurons (MNs). GGGGCC repeat expansions in C9ORF72 gene are the most common identified genetic cause, and even if their pathogenic processes are still unknown, many possible mechanisms have been proposed, including loss of function of the C9Orf72 protein, gain of function from accumulation of RNA foci and sequestration of RNA binding proteins (RBPs), and toxicity caused by dipeptide repeats proteins (DPRs) produced by repeat-associated non-ATG (RAN) translation.

One promising and reliable method to understand C9-ALS pathogenesis is represented by patient-specific induced pluripotent stem cells (iPSC)-derived lines and iPSC-derived MNs. Our therapeutic approaches include the use of antisense oligonucleotides (ASOs) designed to bind complementary mRNA and interfere with specific biological processes. In our laboratory, two different ASOs with Morpholino chemistry have been designed: against the C9ORF72 expansion motif and against the whole C9ORF72 gene; our aim is to characterize the pathological phenotype of the C9-ALS iPSC-derived lines and evaluate the therapeutic effect of ASOs administration on specific pathological markers. We reprogrammed iPSCs from C9-ALS patients and controls and differentiated them into MNs using a 14-days protocol. We investigated the phenotype of the C9-ALS lines compared to controls, evaluating cells survival, pluripotency and motor neuronal markers, R-loops formation, STMN2 expression, defects in axonal elongation. Next step was transfecting ALS-MNs with different Morpholinos and evaluating modification of the previously mentioned pathological markers. Interestingly, we identified in C9-ALS iPSC-derived lines pathological features such as accumulation DNA damage, R-loops increase, and minor axonal elongation, with decreased levels of Nfh, Stmn1 and Sept7 genes. After Morpholino treatments, we observed that ASO therapy could partially rescue the pathological phenotype. Our results suggest that patient specific iPSCs and iPSC-derived MNs are a valuable tool to deepen the knowledge of C9ORF72 pathogenic mechanisms, and that Morpholino-mediated approaches represent a very promising therapeutic strategy that needs to be further validated.

ABSTRACT C9 iPSCs-DERIVED MNs CHARACTERIZATION

Morpholinos (MOs) are antisense oligonucleotides (ASOs) with phosphorothioate-ribose backbone replaced with phosphorodiamidate-linked morpholino backbone that is refractory to metabolic degradation. They are properly designed to bind complementary mRNA and determine an interfering with specific biological processes.

MOA has been designed to bind C9ORF72 promoter and silence C9 gene, while MOB binds C9 GGGGCC expansion. Both MOA and B treatments induce a decrease of DNA damage response activation.

MORPHOLINO OLIGOMERS

PSCs and iPSCs-derived MNs present some pathological hallmarks of C9ORF72-ALS, proving to be an useful patient specific model to study pathogenic mechansim of the disease and to test the efficacy of new therapies. We plan to expand C9 iPSCs-MNs derived characterization and validate the obtained read-outs on new lines.. Our preliminary data showed promising therapeutic potential for MOA and MOB. We will deepen our evaluation assessing the effects of their administration on the pathological features in mature C9 MNs.

CONCLUSIONS

This work is funded by Regione Lombardia (TRANS-ALS project) to GPC and Ministry of Health to GPC.

AKNOWLEDGEMENTS

Fig.1:  Differentiation  of  iPSCs  lines  into  spinal  MNs  using  a  multistep  protocol  (Mauri et al, 2015)

AXONAL DEVELOPMENT GENES AXONAL LENGHT

AXONAL ELONGATION

CTRL C9

DNA DAMAGE

  

CTRL PZ1 CTRL PZ2 C9 PZ1 C9 PZ2

Fig.3:C9  iPSC-derived  MNs  showed  significant  impairment  of    axonal  elongation

Fig. 4: 9 iPSC-derived MNs presented R-loops increase  compared to controls

Fig. 2: C9 iPSC-derived MNs show an increase  of  DNA  damage marker phospho-H2AX and  CDKN1A

Fig.5: C9  MNs  show a  strong  decrease  in  axonal-

related  genes  STMN1,  STMN2,  SEPT7  and NfH  levels in  qPCR

MOLECULAR THERAPY: MORPHOLINO

R-LOOPS

AXONAL DEVELOPMENT GENES

C9 CTRL

Fig.6: 

Mos  rescue  axonal  elongation  in C9  MNs

Fig.7: qPCR analysis  confirms that MO  treatment increases  the levels of STMN-2  and NfH in C9 derived  lines 

h2ax

h2ax

C9 C9+MOA C9+MOB

Smi32 Smi32 Smi32

STMN2

DNA DAMAGE

C9 C9+MOA C9+MOB

Fig.8:  immunostaining  quantification  analysis  for  h2ax  confirms  that  MO  treatment  decreases  expression  of  DNA  damage  proteins  in  iPSCs-derived  MNs

R-LOOPS

Fig.9: MOB  reduced  significantly R-

loops  formation in  C9 iPSCs  lines

h2ax h2ax h2ax

C9 C9+MOB

***

***

STMN2

0.000 0.001 0.002 0.003 0.004

C9

C9+MOA

C9+MOB 0.000000

0.000005 0.000010 0.000015 0.000020 0.000025

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BACKGROUND

OBJECTIVES

Amyotrophic lateral sclerosis (ALS) is a fatal disorder characterized by progressive degeneration of motor neurons (MNs). GGGGCC repeat

expansions in C9ORF72 gene are the most common identified genetic cause

Mechanisms proposed:

- loss of function of the C9Orf72 protein,

- gain of function from accumulation of RNA foci and sequestration of RNA binding proteins (RBPs)

- toxicity caused by dipeptide repeats proteins (DPRs) produced by repeat-associated non-ATG (RAN) translation

iPSCs-derived MNs characterization

Testing Morpholino ASOs on iPSCs-derived lines:

-MOA, designed to bind C9ORF72 promoter and silence C9 gene

- MOB binds C9 GGGGCC expansion

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DN A D

AM AG E

Fig. 4: 9 iPSC-derived  MNs presented R-

loops increase 

compared to controls

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AX ON AL LE NG HT

(5)

TREATMENT WITH MORPHOLINO

(6)

TREATMENT WITH MORPHOLINO

(7)

THANK YOU!

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