6 References
- Agaisse H, L.S. Burrack, J.A. Philips, E.J. Rubin, N, Perrimon, D.E.
Higgins. (2005). Genome-wide RNAi screen for host factors required for intracellular bacterial infection Science 309:1248-1251
- Andrighetti-Fröhner C., R. Antonio, T. Creczynski-Pasa, C. Barardi, and C. Simões. (2003). Cytotoxicity and potential antiviral evaluation of violacein produced by Chromobacterium violaceum. Memórias do Instituto Oswaldo Cruz 98:843-848.
- Bargmann, C.I. (2006). Chemosensation in C. elegans WormBook, ed.
The C. elegans Research Community, WormBook, doi/10.1895/wormbook 1.123.1, http://www.wormbook.org.
- Béjà, O., M. Suzuki, E. Koonin, L. Aravind, A. Hadd, L. Nguyen, R.Villacorta, M. Amjadi, C. Garrigues, S. Jovanovich, R. Feldman, and E. DeLong. (2000). Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage. Environmental Microbiology 2:516-529.
- Blackman, A., and C. Li. (1994). New tambjamine alkaloids from the marine Bryozoan Bugula dentata. Australian Journal of Chemistry 47:1625-1629.
- Blow N.S., R.N. Salomon, K. Garrity, I. Reveillaud, A. Kopin, F.R.
Jackson. P.I. Watnick. (2005). Vibrio cholerae infection of Drosophila melanogaster mimics the human disease cholera. PLoS Pathog 1:e8.
- Blunt, J., B. Copp, M. Munro, P. Northcote, and M. Prinsep. (2005).
Marine natural products. Natural Product Reports 22:15-61.
- Bowman J. P. (2007). Bioactive Compound Synthetic Capacity and Ecological Significance of Marine Bacterial Genus Pseudoalteromonas.
Marine Drugs 5: 220-241.
- Braithwaite, R., and L. McEvoy. (2005). Marine biofouling on fish farms and its remediation. Advances in Marine Biology 47:215-252.
- Brenner, S. (1974). Genetics 77, 71.
- Burke C. (2005). The use of large insert DNA libraries in Escherichia coli for the detection and characterisation of novel bioactive compounds.
Bachelor Degree. University of New South Wales.
- Burke, C., T. Thomas, S. Egan, and S. Kjelleberg. (2007). The use of functional genomics for the identification of a gene cluster encoding for the biosynthesis of an antifungal tambjamine in the marine bacterium Pseudoalteromonas tunicata. Environmental Microbiology 9:814-818.
- Cheng LW, Viala JP, Stuurman N, Wiedemann U, Vale RD, Portnoy DA. (2005). Use of RNA interference in Drosophila S2 cells to identify host pathways controlling compartmentalization of an intracellular pathogen. Proceedings of the Natlural Academy of Science USA 102:13646-13651.
- Courtois, S., C. M. Cappellano, M. Ball, F.-X. Francou, P. Normand, G. Helynck, A. Martinez, S. J. Kolvek, J. Hopke, M. S. Osburne, P. R.
August, R. Nalin, M. Guérineau, P. Jeannin, P. Simonet, and J.-L.
Pernodet. (2003). Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products. Applied and Environmental Microbiology 69:49-55.
- Daniel, R. (2004). The soil metagenome — a rich resource for the discovery of novel natural products. Current Opinion Biotechnology 15:
199–204.
- Donadio, S., P. Monciardini, R. Alduina, P. Mazza, C. Chiocchini, L.
Cavaletti, M. Sosio, and A. Puglia. (2002). Microbial technologies for the discovery of novel bioactive metabolites. Journal of Biotechnology 99:187-198.
- Durán, N., and C. Menck. (2001). Chromobacterium violaceum: a review of pharmacological and industrial perspectives. Critical Reviews in Microbiology 27:201-222.
- Durán, N., S. Erazo, and V. Campos. (1983). Bacterial chemistry II:
Antimicrobial photoproduct from pigment of Chromobacterium violaceum. Anais da Academia Brasileira de Ciências 55:231-234.
- Egan S. (2001) Production and regulation of fouling inhibitory compounds by the marine bacterium Pseudoalteromonas tunicata. PhD.
University of New South Wales.
- Egan, S., S. James, C. Holmström, and S. Kjelleberg. 2001. Inhibition of algal spore germination by the marine bacterium Pseudoalteromonas tunicata. FEMS Microbiology Ecology 35:67-73.
- Egan, S., S. James, C. Holmström, and S. Kjelleberg. (2002).
Correlation between pigmentation and antifouling compounds produced by Pseudoalteromonas tunicata. Environmental Microbiology 4:433-442.
- Egan, S., T. Thomas, C. Holmström, and S. Kjelleberg. (2000).
Phylogenetic relationship and antifouling activity of bacterial epiphytes from the marine alga Ulva lactuca. Environmental Microbiology 2:343- 347.
- Engel, S., P. R. Jensen, and W. Fenical. (2002). Chemical ecology of marine microbial defence. Journal of Chemical Ecology 28:1971-1985.
- Ensley, B. D., B. J. Ratzkin, T. D. Osslund, M. J. Simon, L. P.
Wackett, and D. T. Gibson. (1983). Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo, Science 222:167-169.
- Faulkner, D. (2002). Marine natural products. Natural Product Reports 19:1-48.
- Faulkner, D. J. (2000). Marine pharmacology. Antonie van Leeuwenhoek 77:135-145.
- Franks, A. (2000). Identification and characterisation of an antifungal compound produced by the marine bacterium Pseudoalteromonas tunicata. PhD. University of New South Wales.
- Franks, A., Egan, S., Holmström, C., James, S., Lappin-Scott, H., and Kjelleberg, S. (2006) Inhibition of fungal colonisation by Psudoalteromonas tunicata provides a competitive advantage during surface colonisation. Applied and Environmental Microbiology 72: 6079–
6087.
- Franks, A., P. Haywood, C. Holmström, S. Egan, S. Kjelleberg, and N.Kumar. (2005). Isolation and structure elucidation of a novel yellow pigment from the marine bacterium Pseudoalteromonas tunicata.
Molecules 10:1286-1291.
- Gallacher, S. and T.H. Birkbeck, (1993). Effect of phosphate concentration on production of tetrodotoxin by Alteromonas tetraodonis.
Appl. Environmental Microbiology 59: 3981-3983.
- Gallagher, L.A., and C. Manoil. (2001). Pseudomonas aeruginosa PAO1 kills Caenorhabditis elegans by cyanide poisoning. Journal Bacteriology.
183: 6207–6214.
- Hanahan, D. (1983). Studies on transformation of Escherichia coli with plasmids. Journal Molecular Biology 136: 557-580.
- Handelsman, J. (2004). Metagenomics: application of genomics to uncultured microorganisms. Microbiology and Molecular Biology Reviews 68:669-685.
- Hansen, A.J., O.B. Weeks, R.R. Colwell, (1965). Taxonomy of Pseudomonas piscicida (Bein) Buck, Meyers and Leifson. Journal Bacteriology 89: 752-761.
- Holmström, C., and S. Kjelleberg. (1999). Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiology Ecology 30:285-293.
- Holmström, C., D. Rittschof, and S. Kjelleberg. (1992). Inhibition of attachment of larval barnacles, Balanus amphitrite and Ciona intestinalis by a surface colonising marine bacterium. Applied and Environmental Microbiology 58:2111-2115.
- Holmström, C., S. Egan, A. Franks, S. McCloy, and S. Kjelleberg.
(2002). Antifouling activities expressed by marine surface associated Pseudoalteromonas species. FEMS Microbiology Ecology 41:47-58.
- Holmström, C., S. James, B. Neilan, D. White, and S. Kjelleberg.
(1998). Pseudoalteromonas tunicata sp. nov., a bacterium that produces antifouling agents. International Journal of Systematic Bacteriology 48:1205–1212.
- Holmström, C., S. James, S. Egan, S. Kjelleberg, (1996). Inhibition of common fouling organisms by marine bacterial isolates with special reference to the role of pigmented bacteria. Biofouling 10: 251-259.
- Hope, I.A. (1999). C. elegans. Oxford University Press, Oxford.
- James, S., C. Holmström, and S. Kjelleberg. (1996). Purification and characterisation of a novel antibacterial protein from the marine bacterium D2. Applied and Environmental Microbiology 62: 2783-2788.
- Johan H. J. Leveau. (2007). The magic and menace of metagenomics:
prospects for the study of plant growth-promoting rhizobacteria. Published online: KNPV 2007.
- Kalinovskaya, N., E. Ivanova, Y. Alexeeva, N. Gorshkova, T.
Kuznetsova, A. Dmitrenok, and D. Nicolau. (2004). Low-molecular weight, biologically activecompounds from marine Pseudoalteromonas species. Current Microbiology 48:441-446.
- Kojiri, K., S. Nakajima, H. Suzuki, A. Okura, and H. Suda. (1993). A new antitumour substance, BE-18591, produced by a Streptomycete;
fermentation, isolation, physicochemical and biological properties.
Journal of Antibiotics 46:1799-1803.
- Kurz C. L. and J.J. Ewbank. (2007). Infection in a dish: high-throughput analyses of bacterial Pathogenesis. Current Opinion in Microbiology 10:10–16.
- Lewis, J.A. and J.T. Fleming. (1995). In: Methods in cell biology, Vol.
48, H.F. Epstein and D.C. Shakes, eds. San Diego: Academic Press, p. 3.
- Li, X., and L. Qin. (2005). Metagenomics-based drug discovery and marine microbial diversity. Trends in Biotechnology IN PRESS.
- Lindquist, N., and W. Fenical. (1991). New tambjamine class alkaloids from the marine ascidian Atapozoa sp. and its nudibranch predators - origins of the tambjamines in atapozoa. Experientia 47:504-506.
- Link, E., M. Hardiman, G. Sluder, A.E. Johnson, C.D. and L.X. Liu.
(2000). Therapeutic target discovery using Caenorhabditis elegans.
Pharmacogenomics 1:203-217.
- Longeon, A., J. Peduzzi, M. Barthélamy, S. Corre, J. Nicolas, and M.
Guyot. (2004). Purification and partial identification of novel antimicrobial protein from marine bacterium Pseudoalteromonas species strain X153. Marine Biotechnology 6:633-641.
- Lorenz, P., and J. Eck. (2005). Metagenomics and industrial applications.
Nature Reviews Microbiology 3:510-516.
- Lovejoy, C., J. Bowman, and G. Hallegraeff. (1998). Algicidal effects of a novel marine Pseudoalteromonas isolate (class Proteobacteria, gamma subdivision) on harmful algal bloom species of the genera Chattonella, Gymnodinium, and Heterosigma. Applied and Environmental Microbiology 64:2806-2813.
- Matz, C., P. Deines, J. Boenigk, H. Arndt, L. Eberl, S. Kjelleberg, and K. Jürgens. (2004). Impact of Violacein-Producing Bacteria on Survival and Feeding of Bacterivorous Nanoflagellates. Applied and Environmental Microbiology 70:1593-1599.
- Miller J.D. and M.N. Neely. (2005). Large-scale screen highlights the importance of capsule for virulence in the zoonotic pathogen Streptococcus iniae. Infection Immunology. 73:921-934.
- Nass, R. and R.B. Blakely. (2003). The Caenorhabditis elegans dopaminergic system: Opportunities for insights into dopamine transport and neu- rodegeneration. Annual Review of Pharmacology and Toxicology 43:521-544.
- Nass R. and I. Hamza. (2007). The Nematode C. elegans as an Animal Model to Explore Toxicology In Vivo: Solid and Axenic Growth Culture Conditions and Compound Exposure Parameters. Current Protocols in Toxicology. 31: 1.9.1-1.9.18.
- Osburne, M. S., T. H. Grossman, P. R. August, and I. A. MacNeil, (2000). Tapping into microbial diversity for natural products drug discovery. ASM News 66: 411–417.
- Pace, N. (1997). A molecular view of microbial diversity and the biosphere. Science 276:734-740.
- Philips J.A., Rubin E.J., Perrimon N. (2005). Drosophila RNAi screen reveals CD36 family member required for mycobacterial infection.
Science 309:1251-1253.
- Piel, J., D. Hui, G. Wen, D. Butzke, M. Platzer, N. Fusetani, and S.
Matsunaga. 2004. Antitumor polyketide biosynthesis by an uncultivated bacterial symbiont of the marine sponge Theonella swinhoei. Proceedings of the National Academy of Sciences 101:16222-16227.
- Riddle, D.L., T. Blumenthal, B.J. Meyer, and J.R. Priess. (eds.) 1997.
C. elegans II. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
- Riesenfeld, C., P. Schloss, and J. Handelsman. (2004). Metagenomics:
genomic analysis of microbial communities. Annual Review of Genetics 38:525-552.
- Rondon, M., P. August, A. Betterman, S. Brady, T. Grossman, M.
Liles, K. Loiacono, B. Lynch, I. MacNeil, C. Minor, C. Tiong, M.
Gilman, M. Osburne, J. Clardy, J. Handelsman, and R. Goodman.
(2000). Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Applied and Environmental Microbiology 66:2541- 2547.
- Sambrook J, and D. Russell. (2006). Preparation and Transformation of Competent E. coli Using Calcium Chloride. Cold Spring Harbor Protocols. pdb.prot 3932.
- Schleper, C., G. Jurgens, and M. Jonuscheit. (2005). Genomic studies of uncultivated archaea. Nature Reviews Microbiology 3:479-488.
- Schmidt, E., J. Nelson, D. Rasko, S. Sudek, J. Eisen, M. Haygood, and J. Ravel. (2005). Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella. Proceedings of the National Academy of Sciences 102:7315-7320.
- Simidu U., K. Kita-Tsukamoto, T. Yasumoto, M. Yotsu. (1990) Taxonomy of marine bacteria that produce tetrodotoxin. International Journal of Systematic Bacteriology. 40: 331-336.
- Song, J., J. Jeon, J. Lee, S. Jeong, B. Jeong, S. Kim, J. Lee, and S. Lee.
(2005). Molecular characterisation of TEM-type _-lactamases identified in cold-seep sediments of Edison Seamount. The Journal of Microbiology 43:172-178.
- Stach, J. E., and A. T. Bull. (2005). Estimating and comparing the diversity of marine actinobacteria. Antonie van Leeuwenhoek: 3-9.
- Stiernagle, T. Maintenance of C. elegans (2006), WormBook, ed. The C.
elegans Research Community, WormBook, doi/10.1895/wormbook.1.101.1, http://www.wormbook.org.
- Streit, W., R. Daniel, and K. Jaeger. (2004). Prospecting for biocatalysts and drugs in the genomes of non-cultured microorganisms. Current Opinion in Biotechnology 15:285-290.
- Styer KL, Hopkins GW, Bartra SS, Plano GV, Frothingham R, Aballay A. (2005). Yersinia pestis kills Caenorhabditis elegans by a biofilm-independent process that involves novel virulence factors. EMBO Rep, 6:992-997.
- Sulston, J. & Hodgkin, J. (1988). The Nematode Caenorhabditis elegans, ed. Wood, W. B. Cold Spring Harbor Lab. Press, Plainview, NY, pp. 587–
606.
- Suzuki, M., C. Preston, O. Béjà, J. de la Torre, G. Steward, and E.
DeLong. (2004). Phylogenetic screening of ribosomal RNA gene- containing clones in bacterial artificial chromosome (BAC) libraries from different depths in Montery Bay. Microbial Ecology 48:473-488.
- Tan, M.-W., L.G. Rahme, J. Sternberg, R.G. Tompkins and F.M.
Ausubel. (1999a) Pseudomonas aeruginosa killing of Caenorhabditis elegans used to identify P. aeruginosa virulence factors. Proceedings of the Natlural Academy of Science USA 96:2408-2413 and 715-720.
- Tan, M.-W., S. Mahajan-Miklos, and Ausubel, F. M. (1999b) Killing of Caenorhabditis elegans by Pseudomonas aeruginosa used to model mammalian bacterial pathogenesis. Proceedings of the Natlural Academy of Science USA 96, 715–720.
- Thomas JH and C. Manoil. (1999). Lethal paralysis of Caenorhabditis elegans by Pseudomonas aeruginosa. Proceedings of the Natlural Academy of Science USA 96:15202-15207.
- Thompson L.S., J.S. Webb, S.A. Rice and S. Kjelleberg. (2003). The alternative sigma factor RpoN regulates the quorum sensing gene rhlI in Pseudomonas aeruginosa, FEMS Microbiology Letters Volume 220 2:187-195.
- Thomsen, L. E., S. S. Slutz, M. W. Tan, and H. Ingmer. 2006.
Caenorhabditis elegans is a model host for Listeria monocytogenes. Appl.
Environ Microbiol. 72:1700-1701.
- Trülzsch K., A. Roggenkamp, C. Pelludat, A. Rakin, C. A. Jacobi, and J. Heesemann. (2001). Cloning and characterization of the gene encoding periplasmic 2',3'-cyclic phosphodiesterase of Yersinia enterocolitica O:8 Microbiology 147(1): 203 - 213.
- Vaitkevicius K, M. Lindmark, B. Ou, G. Song, T. Toma, C. Iwanaga, M. Zhu, J. Andersson, A. Hammarstrom, M.L. Tuck. 2006. A Vibrio cholerae protease needed for killing of Caenorhabditis elegans has a role in protection from natural predator grazing. Proceedings of the Natlural Academy of Science USA 103:9280-9285.
- Venter, C. J., K. Remington, J. F. Heidelberg, A. L. Halpern, D.
Rusch, J. A. Eisen, D. Wu, I. Paulsen, W. Nelson, D. E. Fouts, S. Levy, A. H. Knap, M. W. Lomas, K. Nealson, O. White, J. Peterson, J.
Hoffman, R. Parsons, H. Baden-Tillson, and C. Pfannkoch. (2004).
Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
- Voget, S., C. Leggewie, A. Uesbeck, C. Raasch, K. Jaeger, and W.
Streit. (2003). Prospecting for novel biocatalysts in a soil metagenome.
Applied and Environmental Microbiology 69:6235-6242.
- Wang, G., E. Graziani, B. Waters, W. Pan, X. Li, J. McDermott, G.
Meurer, G. Saxena, R. Anderson, and J. Davies. (2000). Novel natural products from soil DNA libraries in a Streptomycete host. Organic Letters 2:2401-2404.
- William R. Kem, F. Soti and D. Rittschof. (2003). Inhibition of barnacle larval settlement and crustacean toxicity of some hoplonemertine pyridyl alkaloids. Biomolecular EngineeringVolume 20, Issues 4-6, Marine Biotechnology: Basics and Applications 355-361.
- Yebra, D., S. Kiil, and K. Dam-Johansen. (2004). Antifouling technology past present and future steps towards efficient and environmentally friendly antifouling coatings. Progress in Organic Coatings: 75-104.
- Zhang, L., R. An, J. Wang, N. Sun, S. Zhang, J. Hu, and J. Kuai.
(2005). Exploring novel bioactive compounds from marine microbes.
Current Opinion in Microbiology 8:276-281.
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