and Cytokine Production
M. Foti, F. Granucci, P. Ricciardi-Castagnoli
4.1 Dendritic Cells Recognize Perturbations of the Immune System . . 63 4.2 Host–Pathogen Gene Profiling . . . 66 4.3 Dendritic Cells and Pathogen Interaction . . . 68 4.4 Dendritic Cells as Sensors of Infection . . . 70 4.5 Dendritic Cell Transcriptional Profile Induced
by Pathogens Include Cytokines and Chemokines . . . 71 4.6 Activation of NK Cells by Dendritic Cells Is Mediated
by Dendritic Cell-Derived IL-2 . . . 75 References . . . 76
Abstract. The dendritic cell lineage comprises cells at various stages of func-
tional maturation that are able to induce and regulate the immune response
against antigens and thus function as initiators of protective immunity. The sig-
nals that determine the given dendritic cell functions depend mostly on the local
microenvironment and on the interaction between dendritic cells and microor-
ganisms. These interactions are complex and very different from one pathogen
to another; nevertheless, both shared and unique responses have been observed
using global genomic analyses. In this review, we have focused on the study of
host–pathogen interactions using a genome-wide transcriptional approach with
a focus on cytokine family members.
Immunity is the result of coevolution of microorganisms and the immune system; microorganisms have learned how to manipulate the immune response to their own advantage. Therefore, host–parasite interaction studies should reveal the molecular mechanisms that control the initia- tion, persistence, and polarization of immune responses.
In host–parasite interactions, dendritic cells (DCs) play a central role since they are located in close contact with the mucosal surfaces where they can sample incoming pathogens. If the amount of pathogen exceeds a certain threshold level for an extended period of time, DCs become activated and acquire a migratory capacity; during this “maturation”
process, DCs undergo an extensive gene transcription reprogramming that involves the differential expression of up to 1,000 genes with the sequential acquisition of immune regulatory activities.
The immune response is extraordinarily complex, and it involves dy- namic interaction of a wide array of tissues, cells and molecules. The diversity of innate immune mechanisms is in large part conserved in multicellular organisms (Mushegian and Medzhitov 2001). Some ba- sic principles of microbial recognition and response are emerging, and recently, the application of computational genomics has played an im- portant role in extending such observations from model organisms, such as Drosophila, to higher vertebrates, including humans. The analysis of gene expression in tissues, cells, and biological systems has evolved in the last decade from the analysis of a selected set of genes to an efficient high throughput whole-genome screening approach of poten- tially all genes expressed in a tissue or cell sample. Development of methodologies such as microarray technology allows an open-ended survey to identify comprehensively the fraction of genes that are dif- ferentially expressed between samples and define the samples’ unique biology (Schena et al. 1995; Duggan et al. 1999; Lipshultz et al. 1999).
This discovery-based research provides the opportunity to characterize
either new genes with unknown function or genes not previously known
to be involved in a biological process.
4.1 Dendritic Cells Recognize Perturbations of the Immune System
Dendritic cells are cells of the innate immunity characterized by broad functional properties (Fig. 1). These cells are divided into myeloid and plasmacytoid DC subsets, but the definition of dendritic cell subset phenotypes and the attribution of specific functions to defined DC stages has been a very difficult task; the definition of DC functional stages as mature versus immature or semi-mature DCs or activated versus steady-state DCs has raised a real language issue. In fact, DCs are characterized by a very high functional plasticity and can adapt their responses upon antigen encounter; they are also able to segregate in time different functions, which will dictate the outcome of the immune response.
DCs are located in nonlymphoid tissues, close to the mucosal sur- faces, where they sample the environment to sense the infectious agents.
For this task, DCs use a broad innate receptor repertoire and their phago- cytic activity. These cells are named myeloid immature DCs and they are mostly resident in those tissues where they have originally seeded.
Cells that have been conditioned by the microbial encounter migrate to
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Sampling the environmentSampling the environmentØ
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Activating inflammatory responsesActivating inflammatory responsesØ
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Activating NK cellsActivating NK cellsØ
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Presenting selfPresenting self--and non selfand non self--antigensantigensØ
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Activating appropriate T cellActivating appropriate T cell responsesresponses
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Regulating immune responsesRegulating immune responsesDCs regulate both DCs regulate both
innate and adaptive immunity by:
innate and adaptive immunity by:
Dendritic cell