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Mitochondrial PITRM1 peptidase loss-of-function in childhood cerebellar atrophy

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Original article

Mitochondrial PITRM1 peptidase loss-of-function in childhood cerebellar atrophy

Yeshaya langer,

1

adi aran,

2

Suleyman gulsuner,

3

Bassam abu libdeh,

4

Paul renbaum,

5

Dario Brunetti,

6,7

Pedro-Filipe teixeira,

8

tom Walsh,

3

Sharon Zeligson,

5

roberta ruotolo,

9

rachel Beeri,

5

imad Dweikat,

4

Maher Shahrour,

4

ariella Weinberg-Shukron,

5

Fouad Zahdeh,

5

enrico Baruffini,

9

elzbieta glaser,

8

Mary-claire King,

3

ephrat levy-lahad,

10

Massimo Zeviani,

6

reeval Segel

11

For numbered affiliations see end of article.

Correspondence to Dr reeval Segel, Department of Pediatrics, Medical genetics institute, Shaare Zedek Medical center, Hebrew University- Hadassah School of Medicine, Jerusalem 91031, israel;

reevals@ szmc. org. il Yl and aa contributed equally.

AbsTrACT

Objective to identify the genetic basis of a childhood- onset syndrome of variable severity characterised by progressive spinocerebellar ataxia, mental retardation, psychotic episodes and cerebellar atrophy.

Methods identification of the underlying mutations by whole exome and whole genome sequencing.

consequences were examined in patients’ cells and in yeast.

results two brothers from a consanguineous Palestinian family presented with progressive spinocerebellar ataxia, mental retardation and psychotic episodes. Serial brain imaging showed severe progressive cerebellar atrophy. Whole exome sequencing revealed a novel mutation: pitrilysin metallopeptidase 1 (PITRM1) c.2795c>t, p.t931M, homozygous in the affected children and resulting in 95% reduction in PITRM1 protein. Whole genome sequencing revealed a chromosome X structural rearrangement that also segregated with the disease. independently, two siblings from a second Palestinian family presented with similar, somewhat milder symptoms and the same PITRM1 mutation on a shared haplotype. PITRM1T931M carrier frequency was 0.027 (3/110) in the village of the first family evaluated, and 0/300 among Palestinians from other locales. PITRM1 is a mitochondrial matrix enzyme that degrades 10–65 amino acid oligopeptides, including the mitochondrial fraction of amyloid-beta peptide. analysis of peptide cleavage activity by the PITRM1T931M protein revealed a significant decrease in the degradation capacity specifically of peptides ≥40 amino acids.

Conclusion PITRM1T931M results in childhood-onset recessive cerebellar pathology. Severity of PITRM1- related disease may be affected by the degree of impairment in cleavage of mitochondrial long peptides.

Disruption and deletion of X linked regulatory segments may also contribute to severity.

INTrOduCTION

Autosomal recessive spinocerebellar ataxias (ARCA) are a clinically and genetically heterogeneous group of neurodegenerative disorders associated with cerebellar atrophy or hypoplasia, imbalance and uncoordinated gait.1 The reported overall prevalence of ARCA is estimated to be 2.2–5.3 per 100 000 births.2 Common forms of recessive

ataxias include ataxia-telangiectasia, Friedreich ataxia and ataxia oculomotor apraxia. Wide pheno- typic variability is observed even with mutations in the same ARCA-related gene.3 Uncommon ARCA forms constitute a heterogeneous group of disor- ders with early onset ataxia as the predominant feature; intellectual disability is present in >60% of these patients.1 Mutations in >45 genes are known to cause ARCA, yet the molecular causes of ARCA in many patients remain unknown.3 Recently, homozygosity for PITRM1R183Q was described in a Norwegian brother and sister in their late 60s with recessive spinocerebellar ataxia.4 Both had mild mental retardation in childhood and gradually developed spinocerebellar ataxia and obsessional behaviour with psychotic episodes.

Pitrilysin metallopeptidase 1 (PITRM1), also known as human presequence protease hPreP, is a 117 kDa mitochondrial matrix enzyme widely expressed in multiple human tissues including skeletal muscle, heart, intestine and cerebellum.5 PITRM1 functions as a mitochondrial peptidase, degrading peptides of up to 65 amino acids.6 Substrates include mitochondrial presequences (oligopeptides cleaved from proteins imported into mitochondria), short unstructured peptides and several forms of amyloid-beta peptide (Aβ).7 8 Mito- chondrial dysfunction is increasingly recognised as a hallmark of neurodegeneration and is a promi- nent feature in primary genetically determined mitochondrial disease as well as in many prevalent neurodegenerative diseases including Parkinson's disease and Alzheimer's disease (AD).7 9 Ιn AD, the accumulation of mitochondrial Aβ plaques precedes the characteristic extensive extracellular Aβ deposi- tion and is evident before the onset of clinical symp- toms both in patients and in Aβ precursor protein transgenic mice.10 11

The PITRM1R183Q mutation observed in the Norwegian family resulted in a marked reduction in PITRM1 protein level in patients’ fibroblasts and skeletal muscle cells. In vitro, its catalytic activity was comparable to wild-type protein. In a yeast model system, the R183Q substitution resulted in lower mitochondrial oxygen consumption and cytochrome content and reduced capacity to degrade Aβ.4 A recent study showed that the struc- tural and electrostatic properties of the conserved

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strand-loop-strand motif containing PITRM1 residue R183 are critically important for PITRM1 function. They showed that the mutational disruption of electrostatic interactions in prox- imity of PITRM1 residue R183 contributes to the loss of enzyme activity and may contribute to the loss-of-function phenotype observed in PITRM1 R183Q-dependent neuropathy.12

Here, we report a novel PITRM1 mutation causing ARCA in four children from two independently ascertained families. Func- tional studies performed on patients’ fibroblasts, with recom- binant protein, and in a yeast model demonstrated that this mutation leads to loss of function and strengthens the connec- tion between impairment of mitochondrial peptide degradation and neurodegenerative diseases.

MeThOds subjects

Families were seen at the medical genetics and paediatric neurology clinics at Shaare Zedek Medical Center and at Al Makassed Hospital, Jerusalem, Israel. Clinical data, blood samples and skin biopsies were obtained after written consent.

Genomic analyses

Genomic DNA was extracted from peripheral blood mono- nuclear cells. Chromosomal microarray analysis (CMA) was performed for all affected individuals and for both parents of family A, as previously described.13 Whole exome sequencing was carried out for all affected individuals in families A and B and for both parents of family A, and whole genome sequencing was carried out for all affected individuals, as previ- ously described.14 15 PITRM1T931M was validated with Sanger sequencing. Segregation in families and mutation frequency in ethnically matched controls from the home village of family A were assayed using a BsmAI restriction digest. Haplotypes were identified using PLINK V.1.9.16

Chromosome X inactivation and analysis

Skewing of X inactivation in females was performed on genomic DNA extracted from peripheral blood leucocytes and fibroblasts from the proband of family A and from leucocytes of his mother.

Details are provided in online supplementary methods.

rNA and protein expression

Total RNA was extracted from peripheral blood leucocytes drawn into Tempus Blood RNA tubes (ABI). cDNA was prepared using ImPromII Reverse Transcriptase (Promega).

qRT-PCR was performed using Power SYBR master mix (Applied Biosystems) and normalised to glyceraldehyde 3-phos- phate dehydrogenase (GAPDH). Experiments were performed in triplicate (see online supplementary table 1).

Protein lysates were extracted from primary fibroblast cell lines. Western blot analysis was performed using rabbit poly- clonal anti-PITRM1 (Sigma, R04409) and anti-GAPDH (Abcam, ab8245), along with an antimouse horseradish peroxidase (HRP)-conjugated secondary antibody (Jackson Immunore- search and Atlas). Protein quantification was performed using ImageJ17 on three independent experiments. GAPDH was used as a loading control.

Purification of recombinant human PITRM1

PITRM1T931M was constructed by site-directed mutagenesis using the QuikChange II kit (Agilent Technologies) and confirmed by sequencing. Production and purification of PITRM1WT and PITRM1T931M were performed as previously described.8

PITRM1 activity

For analysis of Aβ degradation, PITRM1 samples (PITRM1WT or PITRM1T931M) were incubated with Aβ residues 1–42, Aβ residues 1–40, pOTC or pF1b-54 in degradation buffer at 37°C and results visualised using gel electrophoresis as previously described.4 18 Experiments were performed in duplicate. In the fluorescence-based assay, samples (PITRM1WT or PITRM1T931M) were mixed with pF1b residues 43–53, and the increase in fluorescence recorded as previously described.4 19 Details are described in the online supplementary methods.

Yeast studies

cym1S882T and cym1S882M mutant alleles were constructed, cloned and inserted, together with CYM1 WT allele and the empty plasmid pFL38, in strain W303-1B cym1Δ as previously described.4 Oligonucleotides for plasmid construction are listed in supplementary table 1.

resulTs

Clinical presentation Family A

Patient A.IV.3 is the son of consanguineous Palestinian Arab parents. He was born at full term in a vaginal breech delivery after an uneventful pregnancy (figure 1A). Birth weight was 2.7 kg. His development was severely delayed with no regression in early childhood. He presented at the age of 5 months with mild tremor, titubation and brisk deep tendon reflexes. Inde- pendent but non-functional walking was gained by the age of 11 years. At age 15 years, he had severe intellectual disability, total expressive aphasia (pronouncing only a few dysarthric words), severe ataxia and dysmetria. He had several psychotic episodes of unexplained anger attacks, each lasting several weeks. There is no history of seizures. Muscle tone and strength were normal.

Brain CT at age 6 months was normal. Brain MRI at age 9 years revealed severe cerebellar atrophy (figure 1B); magnetic resonance spectroscopy was normal. Blood tests showed constantly elevated muscle enzyme levels: creatine phosphoki- nase (CPK) 1400–2900 (normal values 5–130 U/L),20 lactate dehydrogenase (LDH) 890 (normal values 150–500 U/L) and elevated lactate and pyruvate: pyruvate 0.149 (normal values 0.076±0.026 mmol/L), lactate 1.72 and 3.03 (normal values for age 0.8–1.5 mmol/L). Blood pH, carnitine, acylcarnitine and free fatty acids were within normal limits. Muscle biopsy and mitochondrial oxidative enzyme levels were normal (see online supplementary figure 1). Electromyography (EMG) and nerve conduction velocity tests at the age of 19 years demonstrated only mild symmetric amplitude reduction in sensory responses over the peroneal and sural nerves. Motor conduction velocities (peroneal and tibial nerves) and F-wave responses were normal.

The EMG was normal.

The proband’s older brother, A.IV.2, had similar but some- what milder clinical presentation. Pregnancy and delivery were uneventful. He began walking at age 5 years. At age 18 years, he had moderate-to-severe intellectual disability, severe ataxia and psychotic obsession episodes, with no seizures. Brain CT scan at age 22 months showed mild cerebral atrophy, brain MRI at age 18 years demonstrated severe cerebellar atrophy (figure 1B).

Routine lab and muscle enzyme levels were within normal limits.

Repeated EEG tests of both brothers were normal.

Chromosomal microarray analysis and fragile-X testing were normal for both children. Family history was pertinent for the maternal grandmother reported to have Parkinson's disease.

X-inactivation was tested in the mother, revealing 95:5 skewing

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in peripheral blood leucocytes and fibroblasts (A.III.4, figure 1A).

Both brothers were treated with antipsychotic medications.

Family B

Patient B.IV.1, the oldest child in his family, was born after an uneventful pregnancy at full term by caesarean section due to failure in delivery progression (Figure 1A). Birth weight was 4.4 kg. His parents are Palestinian Arabs, double third cousins, from a different locale than family A. Starting at 2 years of age, he was noted to have mild motor and cognitive impairment, speech delay, unsteady gait and dysmetria. Brain MRI at age 12 years showed normal anatomy. His younger brother, patient B.IV.2, now aged 4 years, has mild motor and speech delay with normal cerebellar function. Brain MRI at age 4 years was normal. Neither brother had seizures. A sister, with normal

mental and motor development, died at the age of 5 years during a first episode of prolonged seizures without fever or meningeal signs. No further information or DNA samples were available from this child. Comprehensive metabolic work-up of both brothers, including LDH, CPK, lactate, pyruvate, pH, ammonia, amino acids and acylcarnitine in blood and urine organic acids, was normal. The older brother was 46;XY, with normal CMA and fragile-X testing. No other neurodegenera- tive diseases were reported in the family.

Gene discovery Family A

Variants from whole exome sequences of the affected children and their parents were selected for autosomal or X linked Figure 1 PITRM1t931M in two families with progressive ataxia and cerebellar atrophy. (a) PITRM1t931M cosegregates with the disease in families a and B under a model of autosomal recessive inheritance. in family a, a rearrangement on chromosome Xp22 also segregates with the disease. Both families are consanguineous; parents in family B are double third cousins. their daughter is deceased with no Dna available. letters under the symbols indicate genotypes. For PITRM1, V indicates PITRM1t931M and n indicates PITRM1Wt. For chr X, Y, Xr indicates the rearranged X-chromosome. ■ affected individuals,

* sampled individuals. (B) Brain Mri, t1 phase from affected children from family a: iV-2 at age 15 years (1, 2) and iV-3 at age 18 years (3, 4). Both sagittal and axial views demonstrate severe cerebellar atrophy.

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recessive inheritance, frequency <1% on a public database (ExAC21), evolutionary conservation and potential damaging effect on gene function (see online supplementary table 2).

PITRM1 c.2795C>T, p.T931M at chr10:3,181,221 was the strongest candidate variant (figure 2A). This variant appeared particularly promising given the report of a different mutation

in PITRM1 in a Norwegian family with a similar pheno- type.4 PITRM1T931M segregated with the disease in family A under a recessive model (figure 1A). Furthermore, threonine at this site is highly conserved in evolution, where only threonine or serine, which share a hydroxyl group in the side chain, are present in the corresponding position (figure 2B). Substitution Figure 2 PITRM1t931M evolutionary conservation and protein levels. (a) all affected children were homozygous for PITRM1t931M. (B) alignment of human PITRM1 with proteins from mammals (black), non-mammals vertebrates (blue), invertebrates (red), protozoa (orange), plants (green) and fungi (grey).

threonine or serine are present in the position corresponding to t931. (c) the effect of the mutation on PITRM1 protein levels was evaluated by western blot analysis of total lysate from fibroblasts from homozygotes (Hom) and heterozygotes (Het) and relatives with wild-type sequence (Wt) from family a and from relatives with Wt sequence from family B (Wt1, Wt2, Wt3). the Wt4 lane carries Wt2 cells treated with shrna and transduced with the empty vector plKO.1. the next three lanes carry fibroblasts from two PITRM1t931M homozygotes and a PITRM1r183Q homozygote. the last two lanes (shrna1, 2) represent Wt2 and Wt3 cells transduced with PITRM1 shrnas. glyceraldehyde 3-phosphate dehydrogenase (gaPDH) was used as a loading control in all experiments. results shown are representative of three experiments. (D) Quantification of PITRM1 western blot product. relative intensity of protein product are compared with Wt. PITRM1 levels were reduced by 39% in a PITRM1t931M heterozygote (*p<0.05), and by 95% in PITRM1t931M homozygotes (**p<0.001). the PITRM1r183Q and shrna lanes were loaded as controls and were not quantified in this experiment.

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of threonine, a polar uncharged side chained amino acid, by methionine, a hydrophobic side chained amino acid, is non-conservative. This variant does not appear in any public database.21–23

Family B

Whole exome sequencing was performed on genomic DNA from the two affected children (figure 1A). Variants were filtered as above, yielding two candidate variants (see online supplemen- tary table 2), including PITRM1 c.2795C>T, p.T931M. Both

brothers were homozygous for PITRM1T931M, which segregated with disease under a recessive model. Finding the same muta- tion in two independent families from neighbouring geographic areas suggested the possibility of a shared founder. Analysis of exome data indicated that PITRM1T931M occurred on the same haplotype in both families, with a shared homozygous segment of 3.6 MB at chromosome 10 at 1 714 886–5 324 817 bp (hg19).

Among healthy individuals from the same village as family A, the frequency of heterozygous carriers of PITRM1T931M was 0.027 (3/110). There were no homozygotes among controls.

Figure 3 PITRM1t931M respiratory capacity and proteolytic activity in a yeast model. CYM1 is the yeast orthologue of PITRM1, and PITRM1t931 corresponds to CYM1S882. Yeast strains examined were: cym1Wt, cym1S882t with serine 882 substituted with threonine, as found in humans, and cym1S882M corresponding to the t931M mutation. (a) Mitochondrial respiratory activity of W303-1B cym1Δ strains transformed with CYM1Wt and mutant alleles. results are means of five independent experiments±SD normalised to the strain transformed with CYM1Wt allele **p<0.01; ***p<0.001 in a one-way anOVa with Bonferroni test. (B) a representative western blot analysis of the previous strains transformed with a plasmid-borne gene encoding the aβ42 peptide localising in mitochondria. aβ42 accumulates in mitochondria transfected with cym1S882M, but not with CYM1Wt plasmids, indicating that cym1S882M has reduced peptide-degrading capacity. no aβ: CYM1Wt strain transformed with a plasmid devoid of the aβ42 gene. aβ42 hyperaccumulator strain: strain mutated in mitochondrial proteases, which hyperaccumulates the aβ42 peptide.

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In our experience, in communities with a high level of consan- guinity, carrier frequencies for recessive disease alleles in this range are not unusual.24 No heterozygotes or homozygotes were seen in 300 Palestinian controls from other geographic locales.

The phenotype of family A is more severe than that of family B, despite the affected children in the two families being homozygous for the same mutation. Furthermore, skewed X-inactivation was observed in white blood cells of the mother and maternal grandmother of the affected children of family A. To investigate how skewed X-inactivation might influence disease severity, we carried out whole genome sequencing for the affected brothers of family A and evaluated data for the X-chromosome using CNVnator,25 Manta-SV26 and by PCR with diagnostic primers (online supplementary file 1) and Sanger sequencing. Both brothers carry a complex rearrange- ment on chromosome Xp22.31 characterised by a deletion of 4.75 kb and an adjacent inserted inverted duplication of 3.89 kb (see online supplementary figure 2). This rearranged region does not harbour any protein coding genes, but includes

signals of methylation and of nucleosome depletion, charac- teristic of active regulatory elements. Also, the rearrangement lies in a 30 kb region that is completely intolerant of structural genomic deletions, unlike most of chromosome Xp.27 The rearrangement was inherited from the children’s mother and maternal grandmother (figure 1A). The rearrangement was not present in anyone in family B or in any other Palestinian control, either from the home village of family A or from other locales. The degree of X-chromosome skewing in cells of the mother and grandmother of the affected children of family A was extreme. In only 5% of their white blood cells was the mutant X-chromosome active, suggesting significant selection against cells with the rearrangement.

Protein stability, mitochondrial respiratory activity and peptidolytic activity of the PITRM1T931M mutant

PITRM1T931M did not alter transcript expression, based on RT-PCR analysis, but did lead to marked reduction of PITRM1 protein, based on western blot analysis (figure 2C,D). Compared with Figure 4 in vitro peptide degradation activity of purified PITRM1t931M. (a) Degradation of pOtc, aβ1–40, aβ1–42 and pF1β by PITRM1Wt or PITRM1t931M as analysed using a gel-based assay (original data used for quantification shown in online supplementary figure 4). Bars represent the mean of two experiments, each indicated by a circle. (B) Degradation of fluorogenic peptide Mca-pF1b43-52 by PITRM1Wt and PITRM1t931M. Bars represent the mean of four experiments. Values are expressed as arbitrary units per second (a.u.s−1).

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controls, PITRM1 levels were reduced by 95% in PITRM1T931M homozygotes (p<0.001) and by 39% in a PITRM1T931M hetero- zygote (p<0.05), suggesting instability of the mutant protein. In fibroblasts from two controls stably expressing a PITRM1-spe- cific shRNA, PITRM1 protein levels were reduced by 60%, similar to the level of PITRM1 protein reduction in fibroblasts from PITRM1R183Q homozygous subjects.4

Given that PITRM1 is a mitochondrial protein, we evaluated the effect of the mutation on respiratory oxidative activity in Saccharomyces cerevisiae, a common model system for evalu- ating mitochondrial function. PITRM1T931 corresponds to serine at residue 882 in the orthologous yeast gene cym1. Substitution of this serine with threonine, as found in humans, has no effect on mitochondrial phenotypes. However, substitution of serine with methionine, as found in patients, significantly decreased both the respiratory activity and the activities of the respiratory complexes (figure 3A and online supplementary figure 3).

We analysed the peptidolytic activity of PITRM1T931M in comparison to wild-type PITRM1 using purified recombinant proteins. As shown in figure 4A, PITRM1T931M was able to cleave short peptides, such as the 24 amino acid OTC peptide, but compared with PITRM1WT, had highly decreased capacity to degrade longer peptides, such as two Aβ species of 40 and 42 amino acids and the 54 amino acid presequence of pF1β (figure 4).

The observed difference is likely to be due to the length of the peptide, rather than its sequence, since PITRM1T931M was able to degrade an 11-residue peptide derived from pF1β as efficiently as was PITRM1WT (figure 4B). In addition, heterologous expression of human Aβ in mitochondria of cymS882M yeast yielded higher levels of longer Aβ peptide compared with results in either wild- type or humanised cym1S882T yeast (figure 3B). This observation indicates that the threonine to methionine substitution reduces the capacity of PITRM1 to degrade mitochondrial Aβ peptide in vivo.

dIsCussION

Autosomal recessive spinocerebellar ataxias are a group of neurodegenerative diseases with wide phenotypic and genotypic heterogeneity. Mutations in the same gene may lead to several distinct phenotypes (eg, FXN, POLG or ATM)1; conversely, the same phenotype may be caused by mutations in different genes (eg, Friedreich ataxia or ataxia with vitamin E deficiency).2 The spectrum of the phenotype is also variable with respect to age of onset, disease severity, rate of disease progression and associated extracerebellar and systemic signs.1 The molecular diagnosis of childhood onset ataxias, cerebellar atrophy and intellectual disability is therefore challenging.

Here, we report a novel mutation in PITRM1 causing ARCA in four children from two families. All four affected children share features of cerebellar dysfunction. In family A, intellectual disability is moderate, and cerebellar dysfunction is much more severe, with significant ataxia from early childhood, and severe cerebellar atrophy on brain imaging at age 9 years. This clinical presentation seems comparable to that observed in two adult siblings from a previously reported Norwegian family, much older than the patients described in this study.4 In family B, the children (aged 13 and 4 years) presented with mild intellectual disability. The older child also had tremor and mild ataxia from age 2 years, with normal brain imaging at age 12 years. This may be compatible with an age-dependent phenotype similar to the previously reported Norwegian family.4 Families A and B share the same mutation, and the clinical variability may be explained by the X-chromosome rearrangement, found only in family A

and leading to significant X-chromosome skewing in the carrier females. In only 5% of their white blood cells was the mutant X-chromosome active, suggesting selection against cells with the rearrangement. We speculate that in the affected children, all of whose cells carry only the rearranged X-chromosome, the effect of the PITRM1 mutation may have been exacerbated either through effects of the deletion on X-chromosome, affecting regulatory regions or, perhaps more likely, through aberrations of cell division or survival.

Combining the two families reported here with the Norwe- gian cases, PITRM1 deficiency points to an age-dependent condition that includes intellectual disability, progressive cere- bellar dysfunction ultimately leading to cerebellar atrophy and psychiatric manifestations and including obsessive behaviour, anger attacks and psychosis. Although PITRM1T931M is a missense mutation, it leads to nearly complete loss of function at the protein level, including almost complete absence of the PITRM1 protein (figure 2C,D). Furthermore, in both human cells and in yeast, PITRM1T931M protein has impaired peptide degradation activity with secondary effects, although slight, on mitochondrial oxidative phosphorylation. Interestingly, the catalytic defect was found only on long peptide substrates (≥40 amino acids), partic- ularly affecting Aβ metabolism. However, oxidative respiratory function in muscle samples of the patients from families A and B was normal, as were their muscle biopsies, suggesting that the mitochondrial effects of this mutation are mild. Its progressive nature may lead to muscle pathology similar to that demon- strated in the previously reported patients at much older ages.4 This is also suggested by elevated muscle enzymes in the most severely affected patient we describe. Future studies may deter- mine if the neuropathology associated with PITRM1 deficiency is explained by impaired processing only of Aβ or whether other proteins are involved.

CONClusION

We describe a novel PITRM1 mutation leading to PITRM1 defi- ciency as the basis of ARCA in early childhood. This mutation impairs degradation of longer peptides in the mitochondria, strengthening the association (see online supplementary file 8) between mitochondrial dysfunction, particularly altered mitochondrial proteostasis, and paediatric neurodegenerative diseases.

Author affiliations

1Department of Pediatrics, Shaare Zedek Medical center, Jerusalem, israel

2Department of Pediatrics, neuropediatrics Unit, Shaare Zedek Medical center and Hebrew University-Hadassah School of Medicine, Jerusalem, israel

3Departments of Medicine and genome Sciences, University of Washington, Seattle, Washington, USa

4Departments of Pediatrics and genetics, Makassed Hospital, al-Quds University, Jerusalem, israel

5Medical genetics institute, Shaare Zedek Medical center, Jerusalem, israel

6Mrc Mitochondrial Biology Unit, University of cambridge, cambridge, UK

7Department of Medical Biotechnology and translational Medicine, University of Milan, Milan, italy

8Department of Biochemistry and Biophysics, arrhenius laboratories for natural Sciences, Stockholm University, Stockholm, Sweden

9Department of chemistry, life Sciences, and environmental Sustainability, University of Parma, Parma, italy

10Medical genetics institute, Shaare Zedek Medical center, Hebrew University- Hadassah School of Medicine, Jerusalem, israel

11Department of Pediatrics, Medical genetics institute, Shaare Zedek Medical center, Hebrew University-Hadassah School of Medicine, Jerusalem, israel

Acknowledgements the authors would like to thank the families for participating in this study.

Contributors Yl participated in conceptualising the study, examined the participants, collected Dna samples and clinical data; performed genetic testing and

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analysis, wrote the first draft and approved final manuscript version. aa participated in conceptualising the study, identified and recruited patients and family members examined the participants, collected Dna samples and clinical data; wrote the first draft with Yl and approved final manuscript version. Sg performed genetic analysis and interpretations and wrote sections of the manuscript. Bal identified and recruited patients and family members examined the participants, collected Dna samples and clinical data and wrote sections of the manuscript. Pr participated in conceptualising the study, provided insights about the hypothesis and directed genetic testing and analysis. DB performed genetic analysis and interpretations and wrote sections of the manuscript. P-Ft performed peptide assays and wrote sections of the manuscript. tW performed genetic analysis and interpretations. SZ performed genetic analysis and interpretations. rr designed and constructed the plasmid bearing the mitochomdrial-targeted a42 peptide coding sequence. rB performed genetic analysis and interpretations and wrote sections of the manuscript.

iD recruited patients and family members, examined the participants, collected Dna samples and clinical data. MS recruited patients and family members examined the participants, collected Dna samples and clinical data. aW-S performed genetic analysis and interpretations. FZ performed genetic analysis and interpretations.

eB designed and performed the experiments in yeast and wrote sections of the manuscript. eg directed peptide assays and wrote sections of the manuscript. M-cK participated in conceptualising the study; directed genomic analysis, interpreted results, obtained funding and critically revised the manuscript. el-l participated in conceptualising the study; directed genetic testing, analysis and interpretation of the results; obtained funding and critically revised the manuscript. ZM directed genetic analysis and interpretations and wrote sections of the manuscript. rS participated in conceptualising the study, identified and recruited patients and family members, examined the participants, collected Dna samples and clinical data, directed genetic testing, analysis and interpretation of the results, wrote the first draft and approved final manuscript version.

Funding this study was supported by grants ta-MOU-10-M30-021 from the US agency for international Development programme for Middle east regional cooperation to el-l; r01MH083989 from the national institutes of Health to Sg and M-cK; Dn2015-04833 from the Swedish research council and the alzheimer Foundation to eg; FP7-322424 from the european research council, Mito-nD- rg89471 from the centre of excellence for neurodegeneration, nrJ-institut de France grant and Mrc core grant to MZ and by a gift from the Hassenfeld family to Shaare Zedek Medical center.

Competing interests none declared.

Patient consent not required.

ethics approval the study was approved by the internal review Board of Shaare Zedek Medical center, by the University of Washington Human Subjects Division and by the israel national ethics committee for genetic Studies (protocol 20/10).

Provenance and peer review not commissioned; externally peer reviewed.

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