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EBV DNA increase in COVID-19 patients with impaired lymphocyte subpopulation count
Stefania Paolucci
a, Irene Cassaniti
a, Federica Novazzi
a, Loretta Fiorina
b, Antonio Piralla
a, Giuditta Comolli
a,c, Raffaele Bruno
d,f, Renato Maserati
d, Roberto Gulminetti
d,
Stefano Novati
d, Francesco Mojoli
e,f, Fausto Baldanti
a,f,*, for the San Matteo Pavia COVID-19 Task Force, R Bruno, M Mondelli, E Brunetti, A Di Matteo, E Seminari,
L Maiocchi, V Zuccaro, L Pagnucco, B Mariani, S Ludovisi, R Lissandrin, A Parisi, P Sacchi, SFA Patruno, G Michelone, R Gulminetti, D Zanaboni, S Novati, R Maserati, P Orsolini, M Vecchia, M Sciarra, E Asperges, M Colaneri, A Di Filippo, M Sambo, S Biscarini,
M Lupi, S Roda, TC Pieri, I Gallazzi, M Sachs, P Valsecchi, S Perlini, C Alfano, M Bonzano, F Briganti, G Crescenzi, AG Falchi, R Guarnone, B Guglielmana, E Maggi, I Martino, P Pettenazza, S Pioli di Marco, F Quaglia, A Sabena, F Salinaro, F Speciale, I Zunino, M De Lorenzo, G Secco, L Dimitry, G Cappa, I Maisak, B Chiodi, M Sciarrini, B Barcella, F Resta, L Moroni, G Vezzoni, L Scattaglia, E Boscolo, C Zattera, MF Tassi, V Capozza, D Vignaroli, M Bazzini, G Iotti, F Mojoli, M Belliato, L Perotti, S Mongodi, G Tavazzi, G Marseglia, A Licari, I Brambilla, D Barbarini, A Bruno, P Cambieri, G Campanini, C. Cavanna, G Comolli, M Corbella, R Daturi, M Furione, B Mariani, P Marone,
R Maserati, E Monzillo, S Paolucci, M Parea, E Percivalle, A Piralla, F Rovida, A Sarasini, M Zavattoni, G Adzasehoun, M Ardizzone, L Bellotti, V Brunco, E Cabano, G Casali, L Capella, D Devitis, L Dossena, G Frisco, G Garbagnoli, F Gardellini, A Girello, A Guerrizio, V Landini, C Lucchelli, V Maliardi, P Piemontese, S Pezzaia, M Premoli, C Rebuffa, C Zanello, J Bagnarino, F Bergami, A Bonetti, G Caneva, I Cassaniti, A Corcione, R Di Martino, A Di Napoli, A Ferrari, G Ferrari, L Fiorina, A Gallone, F Giardina, A Girardi, A Mercato, C Merla, F Novazzi, G Ratano, B Rossi, G Saveriaempillai, IM Sciabica,
M Tallarita, E Vecchio Nepita, J Vitali, A Cerino, S Varchetta, B Oliviero, S Mantovani, D Mele, M Calvi, M Tizzoni, C Nicora, A Triarico, V Petronella, C Marena, A Muzzi, P Lago, S Cutti, V Novelli, F Comandatore, G BatistiBif fignandi, S Gaiarsa, M Rettani, C Bandi, A Ferrari
aMolecularVirologyUnit,MicrobiologyandVirologyDepartment,FondazioneIRCCSPoliclinicoSanMatteo,Pavia,Italy
bLaboratorioGenetica-TrapiantologiaeMalattieCardiovascolari,FondazioneIRCCSPoliclinicoSanMatteo,Pavia,Italy
cExperimentalResearchLaboratories,BiotechnologyArea,FondazioneIRCCSPoliclinicoSanMatteo,Pavia,Italy
dInfectiousDiseaseDepartment,FondazioneIRCCSPoliclinicoSanMatteo,Pavia,Italy
eAnesthesiaandIntensiveCare,EmergencyDepartment,FondazioneIRCCSPoliclinicoSanMatteo,Pavia,Pavia,Italy
fDepartmentofClinical,Surgical,DiagnosticandPediatricSciences,UniversityofPavia,Pavia,Italy
*Correspondingauthorat:DepartmentofClinical,Surgical,DiagnosticandPediatricSciences,UniversityofPavia,27100Pavia,Italy.
E-mailaddresses:f.baldanti@smatteo.pv.it,fausto.baldanti@unipv.it(F.Baldanti).
https://doi.org/10.1016/j.ijid.2020.12.051
1201-9712/©2020TheAuthors.PublishedbyElsevierLtdonbehalfofInternationalSocietyforInfectiousDiseases.ThisisanopenaccessarticleundertheCCBY-NC-ND license(http://creativecommons.org/licenses/by-nc-nd/4.0/).
ContentslistsavailableatScienceDirect
International Journal of Infectious Diseases
j o u r n a l h o m ep a g e : w w w . e l s e v i e r . c o m / l o c a te / i j i d
ARTICLE INFO
Articlehistory:
Received4November2020
Receivedinrevisedform10December2020 Accepted17December2020
Keywords:
COVID-19 EBVDNA
Lymphocytesubpopulation
ABSTRACT
Objectives:TheimmunologicprofileandopportunisticviralDNAincrease weremonitoredinItalian patientswithCOVID-19inordertoidentifymarkersofdiseaseseverity.
Methods:Atotalof104patientsinfectedwithSARS-CoV-2wereevaluatedinthestudy.Ofthem,42/104 (40.4%)werehospitalizedinanintensivecareunit(ICU)and62/104(59.6%)inasub-intensivecareunit (SICU). Humancytomegalovirus (HCMV) andEpstein-Barr virus (EBV),ParvovirusB19 andHuman Herpesvirus6virusreactivationsweredeterminedbyreal-timePCR,andlymphocytesubpopulation countsweredeterminedbyflowcytometry.
Results:Amongopportunisticviruses,onlyEBVwasconsistentlydetected.EBVDNAwasobservedin40/
42(95.2%)oftheICUpatientsandin51/61(83.6%)oftheSICUpatients.Comparingthetwogroupsof patients,theEBVDNAmedianlevelamongICUpatientswassignificantlyhigherthanthatobservedin SICUpatients.Inparallel,asignificantreductionofCD8TcellandNKcountinICUpatientsascompared withSICUpatientswasobserved(p<0.05).Incontrast,BcellcountwassignificantlyincreasedinICU patients(p=0.0172).
Conclusions:AcorrelationbetweenreducedCD8+TcellsandNKcounts,EBVDNAlevelsandCOVID-19 severitywasobserved.Otheropportunisticviralinfectionswerenotobserved.Therelationshipbetween EBVloadandCOVID-19severityshouldbefurtherevaluatedinlongitudinalstudies.
©2020TheAuthors.PublishedbyElsevierLtdonbehalfofInternationalSocietyforInfectiousDiseases.
ThisisanopenaccessarticleundertheCCBY-NC-NDlicense(http://creativecommons.org/licenses/by-nc- nd/4.0/).
Introduction
Coronavirusdisease2019(COVID-19),causedbysevereacute respiratory syndrome Coronavirus 2 (SARS-CoV-2), was first reported in China in December 2019. As of February 21,2020, more than 7,151,000 cases of COVID-19 have been reported worldwideand therearemorethan407,145 deaths.Thespread has already takenonpandemic proportions,affectingover 100 countries, including Italy that counts more than 235,270 cases (Ghinai et al., 2020; Remuzzi and Remuzzi, 2020). In February 2020,alargeCOVID-19outbreakinLombardyItalywasobserved.
The SARS-CoV-2 influence on immunological response, and its relationshipwiththereactivationofopportunisticviralinfection in the clinical course of COVID-19 is still under investigation.
Amongvariouspathogens,opportunisticviralinfectionssuchas humancytomegalovirus(HCMV)andEpstein-Barrvirus(EBV)are particularlyrelevantinimmunocompromisedpatients(Fishman, 2017;Fishman,2013)andtheirreactivationhasalsobeenreported inpatientsinintensivecareunits(ICU)withnopreviousimmune suppression (Schildermans and De Vlieger, 2020; Limaye and Boeckh,2010;Frantzeskakietal.,2015;Ongetal.,2017;Cantan etal.,2019;Coşkunetal.,2017).
Ontheotherhand,theimpactofopportunisticviralreactivation incriticallyillpatientsremainstobeelucidated.
Finally, the impact of COVID-19 infection on the immune systemisnotyetwellknown.Inthisstudy,apossiblerelationship withalterations oftheNKand T-cell subpopulationsleadingto opportunistic virus reactivationwereanalyzed inpatientswith COVID-19havingdifferentdegreesofseverity.
Materialandmethods
Patientcharacteristicsandcomorbidity
Writteninformedconsentwascollected.Atotalof104patients infected with SARS-CoV-2 referred to the Fondazione IRCCS PoliclinicoSanMatteo,PaviabetweenFebruary2020andMarch 2020wereevaluated.Ofthem,42/104(40.4%)werehospitalizedin an ICUand62/104(59.6%) werehospitalized ina sub-intensive care unit(SICU). Thedegreeof severityofCOVID-19(severe vs mild)wasdefinedusingtheAmericanThoracicSocietyguidelines forcommunity-acquiredpneumonia(Metlayetal.,2019).Patient characteristicsandcomorbidityweredescribedinTable1.
CharacterizationofserologicalstatusforHCMV,EBVandparvovirus B19
Antiviralcapsidantigen(anti-VCA),anti-EBNA,anti HCMVand anti-parvovirus B19 specific IgG were quantified from serum samplesusinga chemiluminescentassayaccordingtomanufac- turers’ instructions (Liaison, Diasorin, Saluggia, Italy). Positive results were defined as IgG> 20U/mL for VCA and EBNA IgG, IgG>14U/mLforCMVIgGandIndex>1.1forParvovirusB19IgG.
ViralquantificationinCOVID-19patients
Nasalswabs(NS)orbronchoalveolarlavage(BAL)andwhole bloodwerecollectedduringthehospitalizationfromallpatients, and 200
m
L of clinical specimens were extracted using theQIAsymphony1 instrument with QIAsymphony1 DSP Virus/
PathogenMidiKit(QIAGEN,Hilden,Germany).Specificreal-time reversetranscriptase-polymerasechainreaction(RT-PCR)target- ingRNA-dependent RNApolymeraseandE geneswereusedto detect the presence of SARS-CoV-2 according to the WHO guidelines (Anon, 2020) and Corman et al. protocols (Corman etal.,2020).TheCMVDNAandEBVDNAloadweredeterminedby home-madereal-timePCRinCMVandEBVseropositivesubjects using primersand probesand Applied Biosystems Instruments
Table1
Demographiccharacteristicsofthe104analyzedpatients.
Hospitalization N104
Total ICUa
N42
SICUb N62
P-value
no(%) 42(40.4%) 62(59.6%)
Gender
Male/Female 36/6(85.7%/14.3%) 41/21(66.1%/33.9%) 0.0391 Medianage(years;IQR) 61.5(55 71.25) 73.5(57.8 80) 0.05 Comorbidity
Heartdisease 19.0% 33% 0.25
Hypertension 40.4% 48.1% 0.62
Obesity 30.9% 18.5% 0.27
Lungdisease 4.7% 14.8% 0.20
Diabetes 14.3% 11.1% 1.00
Carcinoma 9.5% 3.7% 0.64
aICU,IntensiveCareUnit.
b Sub-IntensiveCareUnit,Inboldisthesignificantvalue.
S.Paolucci,I.Cassaniti,F.Novazzietal. InternationalJournalofInfectiousDiseases104(2021)315–319
316
(ThermoFisher, Waltham, Massachusetts, United States) as reported(Baldantietal.,2008;Furioneetal.,2012).Atthesame time,ParvovirusB19andHumanHerpesvirus6wereanalyzedina fractionofpatients(Corcoranetal.,2010;Watzingeretal.,2004).
Lymphocytesubpopulationscountandcharacterization
Blood samples were stained with CYTO-STAT tetraCHROME CD45-FITC/CD4-RD1/CD8-ECD/CD3-PC5 and CYTO-STAT tetra- CHROME CD45-FITC/CD56-RD1/CD19-ECD/CD3-PC5, all from BeckmanCoulter,Milan,Italy).ThepercentageofCD4+andCD8+T lymphocytesandCD56+NKandCD19+Bcellswasdeterminedby Navios FlowCytometer System(Beckman Coulter). UsingFlow- CountFluorospheres,CD4+,CD8+TcellsubsetsandCD56+NKand CD19+Bcellswereexpressedasabsolutecounts(cells/
m
l).GatingstrategywassetuponCD45+andsidescatter(SSC).
Statisticalanalysis
Descriptivedatawerereportedorconsideredasabsoluteand relativefrequencies,medianandinterquartilerange(IQR)basedon thetypeofvariabledistribution.Forqualitativevariables,Fisher’s test was used, while the Mann-Whitney test was used for quantitative variables in ordertoperform comparisonbetween groups.Spearman’stestwasusedforthecorrelationanalysis.All testsweretwo-tailed.Ap-value<0.05wasconsideredstatistically significant.AnalyseswereperformedusingtheGraphPadPrism5 (GraphPadSoftware,CA,USA).
Results
Clinicalcharacteristics
Male COVID-19 patients were more frequent in both units (p=0.039).Themostcommonsymptomsdetectedinpatientson admissionorduringhospitalizationinICUandSICU,respectively, were fever (80.9% and 100%; p=0.02), interstitial lung disease (100%and55.6%;p<0.001),dyspnea(100%and37%;p<0.001), and diarrhea (2.3 and 3.7%; p>0.05). Overall, all the patients exceptonewerepositiveforEBVIgG(99%),while100/104subjects (96.2%)wereCMVseropositiveattimeofhospitalization.Finally, 72/104(69.2%)werepositiveforParvovirusB19IgG.
Viraldetectionandquantification
CMV,ParvovirusB19andHHV-640DNAwerenegativeinall patientsanalyzed.EBVpositiveDNAwasobservedin91/103EBV seropositivepatients(88.3%).Ofthem,40/42patients(95.2%)were admittedtotheICUand51/61patients(83.6%)wereadmittedto theSICU.Intheremaining2/42patients(4.8%)and10/61patients (16.4%)intheICUandSICU,respectively,noEBVDNAemiaevents werereported(p=0.1161).TheEBVDNAmedianlevelamongICU patients[4709(IQR1284–32075)IU/mL]wassignificantlyhigher than that observed in SICUpatients[median 1890 (IQR 370.1– 8820)IU/mL;p=0.0289)asshowninFigure1.
Lymphocytesubpopulationcounts
Lymphocytesubpopulationcountswereavailablefor31/42ICU patients (73.8%) and for 55/62 SICU patients (88.7%). A slight reduction of the total lymphocyte count was observed in ICU patientsascomparedwithSICUpatients[median617.5(IQR473.8– 858)cells/
m
lvs823(IQR533–1044)cells/m
l;p=0.0502].Indetail,CD4Tcellcountwasnotstatisticallydifferentbetweenthetwo groupsofpatients[median249(IQR185.3–393.3)cells/
m
lvs286(IQR 182–403) cells/
m
l, respectively; p=0.6953]. On the otherhand,weobservedasignificantreductionofCD8+Tcellcountin ICUpatientsascomparedwithSICUpatients[median95(IQR58– 174) cells/
m
lvs 181(115–257) cells/m
l; p=0.0011]. Similarly, alowermedianNKcountwasreportedinICUpatientsascompared withthegroupofSICUpatients[50(IQR36–90)cells/
m
lvs98(IQR56–163) cells/
m
l; p=0.0131]. In addition, comparing the twogroupsofpatients,BcellcountwassignificantlyincreasedinICU patients[median81(IQR65–203)cells/
m
lvs69(36–113)cells/m
l,respectively;p=0.0172)(Figure2).Nolinearcorrelationbetween EBVloadandCD8T cells,BcellsorNKcellswasobserved(Figure3).
Discussion
Thestrictrelationbetweenimmunosuppressionandreactiva- tionoflatentvirusesandanincreasedprevalenceofopportunistic viralinfectionsiswellknown,especiallyintransplantedpatients andinICUpatients(Fishman,2013;SchildermansandDeVlieger, 2020; Limayeand Boeckh, 2010; Frantzeskakiet al., 2015;Ong etal.,2017;Cantanetal.,2019;Coşkunetal.,2017).
TheimpactofCOVID-19infectionontheimmunesystemisstill largelyunknown.WeobservedasignificantlossofNKandCD8+T cells inCOVID-19patients, which paralleledtheseverityof the Figure1.EBVDNAwasmeasuredin42COVID19-positivepatientsinICU(black dots)andin62COVID19-positivepatientsinSICU(whitedots).MedianandIQRare shownandp-valuewasgiveninthegraph.
Figure2. Lymphocytesubpopulationcountswerecomparedinthe42patientsof theIntensiveCareUnit(greybars)andinthe62patientsoftheInfectiousDisease Department(whitebars).Thep-valuewasmeasuredbytheMannWhitneytestand wasgivenforeachgroupofcomparison;*p<0.05;**p<0.01.
infection.Normally,inhealthysubjectslymphocyteCD3+counts rangefrom690to2540cells/
m
l,lymphocyteCD4+andCD8+countsrangefrom410to1590andfrom190to1140cells/
m
l,respectively;moreover,inhealthysubjects,wereportedthatCD19+Bcellcounts andCD56+NKcellcountsrangefrom163to288cells/
m
landfrom151to296cells/
m
l.Surprisingly,thisNKandCD8+Tcellreductionwasassociated withpresenceofEBVDNAonly.Despitethatthelargemajorityof patientswereseropositiveforbothCMVandB19,noevidenceof circulating CMV and B19 DNAwas observed. In this study, we analyzedthecorrelationbetweenCOVID-19infectionandimmu- nologicalandvirologicalfactors,classifyingpatientsaccordingto theseverityoftheCOVID-19disease.Overall,ahigherproportion ofinterstitiallungdiseaseanddyspneawasobservedamongICU patientsas comparedtoSICUpatients(p<0.001).Interestingly, positiveEBVDNAwasobservedinapproximately87%ofpatients.
TherateofpositiveEBV DNAobservedwashigherinCOVID-19
patients with severe infection (ICU patients) as compared to patients with mild symptoms (SICU patients). Moreover, the median EBV DNA levels in patientswith severe COVID-19was significantlyhigherthaninpatientswithmildCOVID-19disease, supportingtheevidenceofahigherimmuneimpairmentinthe previouspatients. However,no linear correlationbetween EBV DNAloadandlymphocytecountswasobserved.Inlinewiththese results,areducedtotallymphocytecountinpatientsreferredto theICUwasobserved,reportingasignificantreductionintermsof bothCD8+andNKcells ascompared toSICUpatients, whileno significantreductionofCD4+Tcellcountswasobserved.Recent studiesunderlinedamarkedlymphopeniainalargefractionof COVID-19patients(Huang etal., 2020;Tan etal.,2020)witha reductionoftotalTlymphocytes,CD4+TcellsandCD8+Tcellsanda moreprofoundreductioninseverecases(Chenetal.,2020).
Ofnote,thehigherincreaseofBcellcountobservedinpatients with severe symptoms as compared to patients with milder symptoms was in line with results obtained by Chen and colleagues(Chenetal.,2020).However,ourdatawasincontrast withWangandcolleagues’observation,reportingadecreaseofB cellsinpatientswithsevereCOVID-19disease(Wangetal.,2020).
SinceBlymphocytesarethesiteoflatencyforEBV,anincrease ofBcellsinpatientswithseveresymptomscouldberelatedtothe increasedEBVDNAlevelsasoccurringinpatientswithPTLD(post- transplantlymphoproliferativedisorder).Ontheotherhand,the increase of B cell counts during COVID-19 could reflect the antibodyresponse toSARS-CoV-2.Finally,therole of increased levelsofEBVDNAonBcellfunctions,withapotentialimpacton antibodyproduction,isunknown.Thus,wecanonlyspeculatethat thepresenceofdetectableEBVDNAmayplayaroleintheseverity ofCOVID-19diseaseonthebasisofthehigherfrequencyofEBV DNApositivepatientsandthehigherEBVDNAlevels.
Interestingly,amongallopportunistic viruses,reactivationin COVID-19 patients seems to be restricted to EBV, an event somewhatcorroboratingaroleintheseverityofthedisease.In fact,despitethelowrateofCD8+TcellsandNKcellsinpatients withseveresymptoms,CMVreactivation,forexample,wasnever observed.Usually,detectableCMV DNAinwholebloodismore frequent than EBVDNA in immunocompromised patientswith reducedlymphocytecounts.
In conclusion, our data support the possible correlation between lymphopenia and EBV load with COVID-19 disease severity. In order to corroborate ourhypothesis, monitoringof the immunological profile and opportunistic virus reactivation overtimeiswarrantedinordertobetterunderstandtheroleinthe pathogenesisofthediseaseoritsrelationshipwiththeseverityof symptoms.
Funding
This work was supported by the Ministero della Salute, FondazioneIRCCSPoliclinicoSanMatteoRicercaCorrente(grant 80207).
Conflictofinterest
Theauthorsdeclarethattheyhavenocompetinginterests.
Authorcontributions
Stefania Paolucci and Irene Cassaniti: data analysis and interpretation,draftedthearticle;FedericaNovazzi,LorettaFiorina andGiudittaComolli:sampleprocessing.AntonioPiralla:software and data analysis.Raffaele Bruno, Renato Maserati, Roberto Gulminetti,StefanoNovatiandFrancescoMojoli:patientenroll- ment. Fausto Baldanti: critical revision of the article and final Figure3.EBVDNAloadwascorrelatedtoBcellcount(a),CD8+Tcellcount(b)and
NKcount(c);r(RemuzziandRemuzzi,2020)andpvaluewerecalculatedusing Spearman’scorrelationtestandresultsweregivenineachgraph.
S.Paolucci,I.Cassaniti,F.Novazzietal. InternationalJournalofInfectiousDiseases104(2021)315–319
318
approvaloftheversiontobepublished.Allauthorscontributed towarddataanalysis,draftingandrevising thepaper, gavefinal approvaloftheversiontobepublishedandagreetobeaccountable forallaspectsofthework.
Acknowledgements
We thank Daniela Sartori for careful preparation of the manuscript.
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