Future Frontiers in Mitochondrial Cardiac Biology
Overview
New discoveries in molecular genetic technology are beginning to be applied in cardiology arising from chromosomal mapping and identi- fication of genes involved in both the primary etiology and as signi- ficant risk factors in the development of cardiac and vascular abnor- malities. Novel technologies are being developed in animal models, while others are currently being evaluated in early clinical trials.
Genes and proteins involved in the regulation of cardiovascular physiology and in cardiac disease are being intensively studied.
In this chapter, we discuss future frontiers in mitochondrial medicine, including the potential use of cell engineering (e.g., stem cell trans- plantation) in mitochondrial-based cardiac pathologies, the applica- tion of new technologies (e.g., pharmacogenetics and proteomics), and the critical issues that these technologies raise.
Introduction
Despite evidence that mitochondria play a significant role in the
maintenance of normal cardiac function and in cardiac pathology,
fundamental questions remain unanswered regarding the underlying
molecular and biochemical mechanisms involved, and ways this
information can be used in improving clinical diagnosis and
treatment. To address these often difficult questions, a number of
emerging technologies are being recruited, some tested only in animal
models and others being investigated in early clinical trials. Novel
approaches using molecular genetic and cytogenetic technology to
identify genes and proteins involved in cardiovascular regulation and
cardiac diseases are presented in this chapter. Also, critical issues
regarding data management and standardization, ethical concerns
raised by using this novel technology, and the overall availability of
research findings in this important field are addressed.
EMERY-DREIFUSS Lamin /C
AD-DCM
HCM TNNT2 DCM CPTII
RyR2 DCM MTP
PPH
BRUGADA ScnSALQT AD-DCM
HCM MYL3 AVSD CACT 3 ARVD HCM TTN DCM DESMIN 2
IHCM
0CTN2 p-ADR
^AS/WILLIAMS lEIastin i F R D A
I Frataxin '2.5
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LQT
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1PPKAG2
jccMHC 3 ARVD
HCM D C M actin j] MARFAN
" Flbrillin HCM a-TM
ARVD POMPE
a-GLU
ACE
AD-DCM
PDA/CHAR TFAP2B
i HCM TNN13
|MMD DMPK APOE
9 Idei8p22 IASD/VSD IGATA4
IHCM
COX15 AF
IHOLT-ORAM TBX5 INOONAN
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HCM j MYPB-c
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ALAGILLE JAG1 gL Q T
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X-DCM IDUCHENNE I BECKER 1 Dystrophin jFABRY 3 GLA JBARTH JTafezzIn 3DIGE0RGE
TBX1
13 14 15 16 17 18 19 20 21 22
Figure 12.1. Human chromosomal map of inherited cardiovascular disorders.
Disorders and affected genes are localized on ideograms of each of the human
chromosomes. These include ACE, angiotensin-converting enzyme; AD-DCM,
autosomal dominant dilated cardiomyopathy; AF, familial atrial fibrillation; APOE,
apolipoprotein E; ARVD, arrhythmogenic right ventricular dysplasia; AVSD,
atrioventricular septal defect; a-GLU, a-glucosidase; a MHC, a-myosin heavy
chain; a TM, a-tropomyosin; fi ADR, fi adrenergic receptor; fi MHC, fi-myosin
heavy chain; CACT, carnitine-acylcarnitine translocase; CPTII, carnitine palmi-
toyltransferase II; S- SGC, 8 -sarcoglycan; DCM, dilated cardiomyopathy; DMPK,
myotonin protein kinase; FRDA, Friedreich's ataxia; GLA, a galactosidase; HCM,
hypertrophic cardiomyopathy; HERG, human ether-a-go-go related gene; HOS,
Holt-Oram syndrome; JAG1, jagged-1; KCNE1, potassium channel, voltage-gated,
Isk-related subfamily member 1; KCNE2, potassium channel, voltage-gated, Isk-
related subfamily member 2; KVLQT1, potassium voltage-gated long QT syndrome
1 channel; LQT, long QT syndrome; MMD, myotonic muscular dystrophy; MMP9,
matrix metalloproteinase 9; MTP, mitochondrial trifunctional protein; MYBPC,
myosin-binding protein C; MYL2, regulatory ventricular myosin light chain; MYL3,
essential ventricular myosin light chain; NDUFS2, complex I subunit; OCTN2,
organic cation carnitine transporter 2; PDA, patent ductus arteriosus/Char
syndrome; PPH, primary pulmonary hypertension; PPKAy2, AMP-activatedprotein
kinase gamma 2; PTPN11, protein tyrosine phosphatase; RYR2, ryanodine receptor
2; SCO
2, synthesis of cytochrome c oxidase (COX assembly protein); SCN5A,
sodium channel, voltage-gated, type V, a polypeptide; SVAS, supravalvular aortic
stenosis; TBXI, T-box 1 transcription factor; TBX5, T-box 5 transcription factor;
TFAP2B, transcription factor of the AP-2 family; TNNT2, cardiac troponin T;
TNN13, cardiac troponin I; TTN, titin; VCFS/DG, velocardiofacial syndrome/DiGeorge; WPW, Wo Iff-Par kins on-White syndrome; X-DCM, X-linked dilated cardiomyopathy.
Disease gene identification: Diagnostic application
Breakthroughs in molecular genetic technology have just begun to be applied in cardiology stemming from the use of chromosomal mapping and the identification of genes involved in the primary etiology and as significant risk factors in the development of cardiac and vascular abnormalities. Specific genetic and molecular factors have been linked to congenital heart defects (CHD) and cardiac arrhythmias allowing their identification on the human chromosome map and provide a valuable opportunity for improved genetic diagnostics and future gene therapy of cardiovascular disease (CVD) (Figure 12.1).
Many of the nuclear gene defects implicated in cardiomyopathies were originally mapped by linkage analyses in affected families, allowing the subsequent identification of candidate genes (and mutant alleles) by positional cloning and subsequent nucleotide sequence analysis. A variety of molecular techniques including polymerase chain reaction (PCR), restriction fragment length polymorphism (RFLP), and single-strand conformation polymorphism (SSCP) have been used in screening defective alleles from the proband and family members to establish inheritance patterns. In most cases, detection of novel nuclear mutations by itself is an immense undertaking involving a comprehensive analysis of large and multiple coding regions (exons) of 1, if not more, candidate genes, an undertaking less problematic with the shorter, intron-less mtDNA genes. Moreover, in the relatively well-characterized cases of familial HCM gene screening, the consensus experience has been that each specific HCM-causing mutation is rare, challenging the view of common mutations since most families have "private" or novel mutations [1].
While somewhat true of mtDNA mutations, molecular "hotspots"
(e.g., tRNA
Leuand cyib genes) appear to be more likely affected in
mitochondrial cardiomyopathies [2]. The correlation of the clinical
course and prognosis with specific mutations has often proved
informative with nuclear gene mutations. For instance, specific B-
MHC mutations in HCM are associated with a high incidence of
sudden death, whereas other mutations are associated with a better prognosis. In contrast, specific mtDNA gene mutations are more frequently associated with variable clinical phenotypes and modifying nuclear factors influencing the expression of pathogenic alleles have often been proposed as discussed below.
Recent advances in the detection of pathogenic mutations providing improved sensitivity and speed by applying high-throughput analytical techniques such as denaturing high-performance liquid chromatography (DHPLC) or capillary array electrophoresis will further advance the use of molecular genetic analysis in clinical and preclinical diagnosis [3]. Moreover, the availability of gene chip tech- nology may allow in the near future, not only the automated and rapid screening of mtDNA and nuclear gene mutations from clinical samples but also the assessment of their impact on specific myocardial gene expression.
Modifying Factors, Epigenetics, and SNPs
Genetic heterogeneity and intrafamilial variability have also made difficult the precise molecular elucidation of many cardiac defects, as well as the correlation of genotype with cardiac phenotype. As noted above, these difficulties may arise from the involvement of undefined multifactorial or polygenic factors that contribute to the expression of specific cardiac gene defect(s), as well as to a variety of epigenetic or acquired influences. Progress is gradually being made in defining these polygenic and epigenetic factors, a number of which have proved amenable to molecular analysis. Modifications of nuclear DNA and its nuclear environment (i.e., chromatin) may be a significant factor in the expression of cardiovascular diseases.
Epigenetic alterations in chromatin (e.g., histone acetylation) have
been directly implicated in the modulation of myocardial gene
expression in the progression of cardiac disorders, including cardiac
hypertrophy, and can play a contributory role in modulating the
heart's responses to physiological insult [4-5]. Another key epi-
genetic mechanism involves the methylation of cytosine residues in
DNA that has been implicated in genomic imprinting, gene inact-
ivation or silencing, and changes in chromatin structure and genome
stability [6]. It is well established that a major mechanism for gene
expression down-regulation involves the methylation of a cytosine-
and guanosine-rich area termed the CpG island, often located within the promoter region of genes [7]. While there has been limited systematic study addressing the relationship of DNA methylation to the expression of cardiac genes, either during myocardial develop- ment, normal physiological transition, or during cardiac disease, a number of pivotal cardiac genes whose aberrant function can result in cardiac disorders contain CpG islands and can be regulated by methylation [8]. The stability and expression of the cardiac troponin gene associated with cardiac contractility function (and with HCM phenotype) is affected by cytosine methylation [9]. Recently, it was demonstrated that the expression of the KVLQT1 gene involved in cardiac membrane transport genes can be modulated by targeted DNA methylation [10]. Notably, defects in this gene have been definitively implicated in the etiology of long QT syndrome, cardiac arrhythmias, and sudden cardiac death [11]. Moreover, the mtTFA gene associated with mitochondrial biogenesis is also regulated by DNA methylation [12]. The promoter of human mtTFA contains 67 CpG dinucleotides localized at its NRF-1 binding site. In vitro methylation of the NRF-1 site by Hhal methylase abolished the mtTFA promoter activity up to 90%, implying that the CpG methylation of NRF-1 site inactivates mtTFA promoter-driven transcriptional activity. The role of DNA methylation in mitochondrial-based diseases awaits to be investigated.
High levels of homocysteine, an important risk factor associated with CVD, have been correlated with decreased levels of DNA methylation (or increased hypomethylation) [13]. DNA hypomethyla- tion, associated with elevated levels of hyperacetylated and decondensed chromatin due to decreased binding of methyl-sensitive proteins (e.g., methyl CpG binding protein and histone deacetylase) may allow specific regions of DNA to be more highly susceptible to oxidative damage and DNA strand breakage. Increased homo- cysteine-mediated DNA hypomethylation and associated alterations in gene expression and chromatin structure may prove informative in understanding the pathogenesis of diseases related to homocys- teinemia including CVD.
There is evidence that the genetic background in which deleterious
mutations occur can significantly modulate their phenotypic expres-
sion. The presence of modifier genes in the genetic background that
influence the phenotypic expression and severity of pathogenic HCM
genes has been well established [14]. A number of maternally inheri-
ted disorders with variable penetrance, often restricted to single tissue
expression, including LHON, mitochondrial nonsyndromic sensori- neural hearing loss, and a form of mitochondrial HCM, have been proposed to be caused by a primary homoplasmic mtDNA pathogenic mutation acting in concert with a nuclear modifier, which can be a common functional polymorphism in a tissue-specific protein, possibly with mitochondrial location [15]. In this disease model, the mtDNA mutation is necessary but not sufficient to induce the pathology, whereas the nuclear modifier does not induce any pathology per se but contributes to the pathogenic effect of the mito- chondrial mutation.
The identification of modifier genes, which will markedly improve the elucidation of genetic risk factors, has been assisted by large-scale genome-wide approaches to identify polymorphic variants correlated with disease severity. A list of genes with polymorphic variants associated with cardiac and mitochondrial diseases is presented in Table 12.1.
A large variety of molecular techniques are presently available for the detection of single nucleotide polymorphisms (SNPs). SNPs association studies have identified several candidate modifier genes for various cardiac disorders [16]. A number of specific genetic polymorphisms have been reported in association with myocardial infarction, coronary artery disease, and HCM. With the increased cataloging of SNPs either alone or within a larger chromosomal region (haplotypes) in available shared databases, these modifier loci can be evaluated for their effects in predisposing to specific cardiac defects and may impact on the choice of diagnostic and treatment options (e.g., pharmacogenetics). The analysis of SNPs in mtDNA has also been recently reported in Parkinson's disease, nonsyndromic hearing impairment, and LHON [17-19], but SNPS in mtDNA have not yet been assessed in association with cardiac disease.
Understanding cardiovascular disease at the genomic level may e-
ventually allow for the more effective stratification of patient
subclasses, opening the door to a highly targeted and optimized
patient-specific therapy. The related fields of pharmacogenomics and
pharmacogenetics hold the promise of improved drug development
and the tailoring of drug therapy based on the individual's ability to
metabolize drugs that are determined only in part by age and
influenced by disease, environmental factors (e.g., diet), concurrent
Table 12.1. Polymorphic variants associated with cardiac and mitochondrial disease
Site Affected (loci) ATP-cassette binding protein (ABC or MDR) Angiotensin converting enzyme (ACE)
Apolipoprotein E (APOE)
(3-adrenergic receptor (ADR(3 1)
Cholesterol ester transport protein (CETP)
MinK related protein (KCNE2/MiRPl) Endothelin receptor A (ETA)
Plasminogen-activator inhibitor type 1 (PAI-1) Stromelysin-1 (MMP-3) mtDNA
T16189C inD-loop
t R N AL e u ( C U N )