S. B. Reeder, MD, PhD
Department of Radiology, E3/311 CSC, 600 Highland Avenue, Madison, WI 53792-3252, USA
C. A. McKenzie, PhD
Department of Radiology, Beth Israel-Deaconess Medical Center, Boston, MA
C O N T E N T S
25.1 Introduction 269 25.2 Chemical-Shift-Based Water-Fat Separation 270 25.2.1 Noise Performance of
Water-Fat Separation Methods 273 25.3 Parallel Imaging and Water-Fat Separation:
Complementary Methods 274 25.3.1 Combining Parallel Imaging and
Water-Fat Separation Methods 274 25.3.2 Applications of Parallel Imaging and Water-Fat Separation 278 25.4 Conclusion 280
References 282
Advanced Methods of 25
Fat Suppression and Parallel Imaging
Scott B. Reeder and Charles A. McKenzie
25.1
Introduction
Uniform and reliable suppression of fat is essential for accurate diagnoses in many areas of MR imaging.
This is particularly true for sequences such as T1- weighted spoiled gradient echo sequences (SPGR), steady-state free precession (SSFP), and fast spin- echo (FSE) imaging where fat is bright and may obscure underlying pathology. Conventional fat- saturation is often adequate for areas of the body with relatively homogeneous main (B
o) magnetic fi eld; however, there are many applications where fat-saturation commonly fails. Off-isocenter imaging,
extremity imaging, large fi eld of view (FOV) imaging, and areas such as the skull base and brachial plexus, as well as many others, are all examples of imaging applications where B
0is rarely homogenous. Conven- tional fat-saturation pulses are also sensitive to RF (B
1) inhomogeneities, which may be problematic for transmit surface coil applications.
Short-TI inversion recovery (STIR) imaging pro- vides very uniform fat-suppression, but has mixed contrast that is highly dependent on T1, and has reduced the signal-to-noise ratio (SNR) (Bydder et al. 1985). In addition, the possibility of suppress- ing contrast-enhanced tissue limits STIR to proton density or T2-weighted applications, and most clini- cal T1-weighted applications rely solely on conven- tional fat-saturation methods. STIR also has reduced sequence effi ciency because of the need to play an inversion pulse followed by a relatively long inver- sion time (TI) (approximately 200 ms at 1.5 T). Other fat-suppression techniques include water-selective
“spectral-spatial” pulses, and although these water- selective methods are insensitive to B
1inhomoge- neities, they remain sensitive to B
oinhomogeneities (Meyer et al. 1990; Block et al. 1997).
First described in 1984 by Dixon (1984), “in and out
of phase” imaging exploits the difference in chemical
shifts between water and fat in order to separate water
and fat into separate images. This approach was fur-
ther refi ned by Glover using a “three-point” method
that acquired three separate images at different echo
times to compensate for B
ofi eld inhomogeneities
(Glover 1991; Glover and Schneider 1991). Three-
point water-fat separation methods have been success-
fully applied to other sequences including fast spin-
echo (FSE) (Hardy et al. 1995), gradient echo (GRE)
imaging (Wang et al. 1998), steady-state free preces-
sion (SSFP) (Reeder et al. 2003) and spiral methods
(Moriguchi et al. 2003). Chemical-shift-based water-
fat separation methods that measure fi eld inhomo-
geneities, and subsequently compensate for them,
provide robust water-fat separation in areas that are
challenging for conventional fat-saturation methods.
In addition, water-fat separation methods are insen- sitive to B
1inhomogeneities and are well suited for transmit surface coil applications. A fi nal advantage of water-fat separation methods compared with fat sup- pression methods is the availability of the fat image, which improves tissue characterization through direct visualization of fat in addition to water.
A recently described method, IDEAL (Iterative Decomposition of water and fat with Echo Asymme- try and Least-squares estimation), has been applied to FSE (Reeder, Pindeda, Wen et al. 2005) and gradi- ent echo imaging (Reeder, Pindeda, Yu et al. 2005).
This method uses an iterative method to determine the fi eld inhomogeneity map, allowing the algorithm to remove phase shifts in the source images caused by fi eld inhomogeneities, and subsequently calculates separate water and fat images in the least squares sense. This method allows for arbitrary and unequally spaced echoes, allowing the optimal combination of echo shifts to be used to maximize the SNR perform- ance of the water-fat decomposition (see below). In this chapter, examples of water-fat decompositions will be shown using the IDEAL method, although other chemical shift-based water-fat methods can also be combined with parallel imaging.
25.2
Chemical-Shift-Based Water-Fat Separation For most clinical MR applications an image will con- tain both water and fat. The signal from a voxel will
have a complex dependence on the amount of water and fat in that voxel, as well as the echo time and the local fi eld inhomogeneity. Mathematically, the signal from such a voxel can be written,
s t ( )
nW Fe
i2P$ffwtne
i2PYtn(1) where t
nis the echo shift from the spin-echo or TE=0 for gradient echo imaging, W and F are signal intensities from water and fat, ∆f
fwis the chemical shift between water and fat, approximately –210 Hz at 1.5 T or –420 Hz at 3.0 T, and ψ is the off-resonance frequency shift (Hz) resulting from local B
oinhomo- geneities. Figure 25.1 shows a vector diagram of the signal contributions from water (red) and fat (blue) to the observed signal (purple) when water and fat are in-phase (t=0) and at some time t chosen to achieve a phase θ between water and fat. The angle ϕ = 2πψt is the phase resulting from local fi eld inhomogeneity, ψ, acting on both the water and fat vectors.
By sampling s(t
n) at three or more different echo times t
n, there is suffi cient information to decom- pose water from fat. The specifi c choice of echo times greatly infl uences the best possible SNR perform- ance of the water-fat decomposition. For example, conventional three-point methods, fi rst described by Glover (Glover 1991; Glover and Schneider 1991), acquired echoes with a relative water-fat phase shift ( θ = 2π∆f
fwt
n) of - π, 0, π, i.e.: out of phase, in-phase, and out of phase. With this echo combination, the effective number of signal averages (NSA) can be shown to be approximately 2.7, about 10% less SNR than the maxi- mum possible NSA of 3.0, which would be achieved if all the information from the three source images was
Fig. 25.1. Water (red) and fat (blue) signal add to form the observed signal (purple), shown at two different echo times, t=0 (in-phase) and t = 1/2 πθ∆f
fwt = 0
t = 1/( πθ∆f
fw) ϕ θ
Water Fat Signal
used effi ciently to separate water from fat. Recently, it has been shown that the SNR of the water and fat image is maximized when the relative phase of water and fat is perpendicular (i.e.: θ = 2π∆f
fwt
n= π/2, 3π/2, etc.), for one of the echoes, and the other two echoes are acquired with a relative phase shift 2 π/3 before and after the per- pendicular echo (Pineda et al. 2005). This would cor- respond to echo shifts of -0.4ms, 1.2 ms and 2.8 ms for FSE imaging at 1.5 T. For this combination of echoes, the SNR performance reaches the maximum possible with NSA=3.0. This work has also shown that in gen- eral, there is a strong dependence of the SNR behavior on the proportion of water and fat in a voxel, except for the above combination of echo shifts when the NSA is 3.0 for all ratios of water and fat. Figure 25.2 sum- marizes one possible water-fat separation approach using IDEAL. It is important to note that although it is possible to acquire all three echoes within a single TR using an echo-planar readout, multi-echo approaches are restrictive, and it is diffi cult to achieve the optimal echo shifts while maintaining fl exibility in the acquisi- tion paramters such as bandwidth and matrix size.
Figure 25.3 shows an example of a calculated water T2-weighted FSE image of the brachial plexus of a normal volunteer acquired with a neurovascular coil, compared with a conventional T2-weighted fat-satu- rated FSE image. Large areas of failed fat-suppres- sion seen in the fat-saturated image, caused by severe
susceptibility commonly seen in the head and neck region, show uniform separation of water from fat in the IDEAL image.
Extremities such as the ankle and foot are also chal- lenging areas where conventional fat-saturation com- monly fails as a result of unfavorable geometry that exacerbates susceptibility differences. Figure 25.4 is an example of IDEAL-FSE imaging in an ankle with a metallic fi xation plate, demonstrating improved sup- pression of fat compared to conventional fat-satura- tion, despite the presence of metallic hardware.
Characterization of tissues through direct visuali- zation of fatty tissue is a distinct advantage of water- fat separation methods. For example, Fig. 25.5 shows separated T2-weighted-FSE water and fat images, as well as recombined images from the pelvis of a woman with an adnexal mass. A large component of this bright mass separates into the fat-only image, confi rming the diagnosis of ovarian dermoid with high confi dence.
As a companion case to the images shown in Fig. 25.5, Fig. 25.6 shows T1-weighted IDEAL-FSE images through the pelvis of a woman with endome- triosis. A small hyperintense mass along the right pelvic side-wall separates into the water-only image, indicating that this is not a fatty mass as may have been initially suspected on a non-fat suppressed image.
Fig. 25.2. Schematic of the IDEAL water-fat separation method. Three complex images acquired at optimized echo shifts ( θ
1, θ
2, and θ
3) are used by an iterative fi eld map calculation to determine the fi eld map ( ψ). The effects of the fi eld map are removed from the source images and water and fat images are subsequently calculated using a least-squares solution
Iterative fi eld map calculation θ
1= – π/6
θ
3= 7 π/6 θ
2= π/2
Field map ( ψ )
Least-squares solution for water & fat Water
Fat Fat
Water
Complex
Source Images
An interesting variation of chemical shift-based imaging is the separation of water and silicone.
Silicone and water have a relative chemical shift of approximately –315 Hz at 1.5 T (Schneider and Chan 1993). This opens the potential for water-sili- cone separation, an application particularly impor- tant for evaluation of silicone breast implant rupture.
An effective approach using a STIR inversion pulse
Fig. 25.3a,b. a Coronal water T2-weighted IDEAL-FSE image of the brachial plexus and cervical spine shows tre- mendously improved fat suppression in comparison to b conventional fat-saturated FSE imaging, which shows large areas of failed fat saturation and inadvertent water suppression leading to a non-diagnostic image
Fig. 25.4a,b. Coronal T2-weighted im- ages of an ankle with a metallic fi bular screw acquired with a IDEAL-FSE and b conventional fat-saturated FSE. Areas of failed fat-saturation near the screw as well as elsewhere are seen in the fat- saturated image (arrows)
a b
a b
to suppress signal from fat within the breast has been described by Ma et al. (2004). In this approach, the separation of water and silicone is performed by adjusting the echo shifts slightly to achieve the same phase shifts normally used between water and fat.
Because water and silicone have a relative chemical
shift larger than that between water and fat, the echo
shifts are smaller than those used for water-fat sepa-
Fig. 25.5a–c. T1-weighted IDEAL-FSE a recombined, b water and c fat images in a woman with a right adnexal mass. A large component of this mass separates into the fat image (thin ar- row) confi rming the diagnosis of ovarian dermoid with high confi dence. Note the small amount of free pelvic fl uid (thick arrow) in the water image
Fig. 25.6a–c. T1-weighted IDEAL-FSE a recombined, b water and c fat images in a woman with endometriosis showing a small hyperintense mass along the right pelvic sidewall, representing a small endometrioma. It is not a fatty mass as was initially suspected on non-fat suppressed imaging
b
c
b c a
a
ration. Figure 25.7 shows an example of T2-weighted IDEAL-STIR imaging of a breast containing a com- posite saline-silicone implant demonstrating uni- form separation of silicone and water with uniform suppression of fat. The silicone component has rup- tured and is clearly visualized in the silicone-only image.
25.2.1
Noise Performance of
Water-Fat Separation Methods
As mentioned above, the noise performance of an estimation technique such as water-fat decomposi- tion used in chemical shift-based separation methods can be described with the effective number of signal averages (NSA), which is equivalent to signal aver- aging commonly used to describe MR acquisitions.
With conventional three-point methods, NSA is 2.7, and with IDEAL, NSA is 3.0, the maximum possible for any three-point method, utilizing all available signal in an effi cient manner. An effective average of three implies that the SNR of the decomposed water and fat images will increase by 3 (≈1.73) compared to the SNR of a single source image.
25.3
Parallel Imaging and Water-Fat Separation:
Complementary Methods
Accelerating a water-fat separation acquisition with
parallel imaging will help alleviate the three-fold
increase in scan time compared with conventional
fat-saturated methods. However, from Chaps. 2 and
3, we know that there is an inherent SNR penalty that occurs when we use parallel imaging to accelerate an acquisition. As described in those chapters, the local SNR at a pixel within an accelerated image is given by,
SNR SNR
R
g R
0(2)
where SNR
0is the SNR of the pixel in an unac- celerated image, R is the “reduction” or acceleration factor, and g is the “geometry” or g-factor that refl ects additional noise amplifi cation due to ill-condition- ing of the unwrapping process. Although the g-factor always has a value of 1.0 or higher, it is close to 1.0 for well-designed coil arrays and low acceleration factors.
The g-factor depends on a wide variety of parameters including orientation of the phase encoding direc- tion, the acceleration factor used, fi eld of view, the object being imaged, and the design of the coil ele- ments in the array used for data reception.
For a water-fat separation acquisition, the SNR is given by
SNR SNR NSA
R