• Non ci sono risultati.

KEGG Pathways

N/A
N/A
Protected

Academic year: 2021

Condividi "KEGG Pathways"

Copied!
3
0
0

Testo completo

(1)

17/03/20, 17)02 Orange Data Mining - KEGG Pathways

Pagina 1 di 3 https://orange.biolab.si/widget-catalog/bioinformatics/kegg_pathways/

KEGG Pathways

Diagrams of molecular interactions, reactions, and relations.

Inputs - Data: Data set. - Reference: Referential data set.

Outputs - Selected Data: Data subset. - Unselected Data: Remaining data.

KEGG Pathways widget displays diagrams of molecular interactions, reactions and relations from the KEGG Pathways Database. It takes data on gene expression as an input, matches the genes to the biological processes and displays a list of corresponding pathways. To explore the pathway, the user can click on any process from the list or arrange them by P-value to get the most relevant processes at the top.

(2)

17/03/20, 17)02 Orange Data Mining - KEGG Pathways

Pagina 2 di 3 https://orange.biolab.si/widget-catalog/bioinformatics/kegg_pathways/

G. Information on the input genes.

H. If you have a separate reference set in the input, tick From signal to use these data as reference.

I. To have pathways listed and displayed by vertical descent, tick Show pathways in full orthology.

J. To fit the image to screen, tick Resize to fit. Untick the box if you wish to explore the pathways.

K. To clear all locally cached KEGG data, press Clear cache.

L. When Auto commit is on, the widget will automatically apply the changes. Alternatively press Commit.

O. A list of pathways either as processes or in full orthology. Click on the process to display the pathway. You can sort the data by P-value to get the most relevant results at the top.

Example

This simple example shows how to visualize interactions with KEGG Pathways. We have loaded the Caffeine effect: time courses and dose response (GDS2914) data with the GEO Data Sets widget. Then we have observed the pathways in KEGG Pathways. We have used reference from signal and selected AGE-RAGE signaling pathway in diabetic complications.

(3)

17/03/20, 17)02 Orange Data Mining - KEGG Pathways

Pagina 3 di 3 https://orange.biolab.si/widget-catalog/bioinformatics/kegg_pathways/

Riferimenti

Documenti correlati

To the best of our knowledge, no study has yet looked at the relationship between institutional quality and other local covariates, on the one hand, and firm employment growth, on

Correlation between single values of eLPI and a TSAT: %transferrin saturation, b serum ferritin, c grams of transfused RBC, d number of RBC transfusions... In previous studies, we

This is quantitatively confirmed by the velocity sampled at the apex probe, which shows negligible values over the whole cycle, and by the time evolution of the flow kinetic

Although severe oxidative stress may con- tribute to the progression of CLDs by eliciting parenchymal cell death, a significant derangement in redox homeostasis, resulting in

Esquilino (as well as Pigneto-Torpignattara) is one of the most studied district areas of Rome as it represents a metaphor for the Italian multi-ethnic society (Kaplan &

Inoltre, per quanto ri- guarda l’individuazione di lavoratori con particolare sen- sibilità al rischio, non sono state riscontrate indicazioni nella letteratura scientifica di

Relevant residuals, plotted in terms of sigmas with error bars of size one, when different models are applied to the XMM-Newton (black, pn; red, MOS) and NuSTAR (green, FPMA;

In this paper we have introduced a new NLO-accurate matching prescription, that we have called MC@NLO-∆, by starting from the MC@NLO cross section and by augmenting it with